PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn274221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 460aa    MW: 52265.4 Da    PI: 8.4499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn274221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-152781799
                E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 lp k a++   +    +++++led +g++W+v+l  +k+ g+  +++GW+ F  ++gL++gDf +F+++  s+f  vv+++ k
  Achn274221  2 FLPPKIARTVlHL---IDQKIQLEDARGERWTVTL--SKCNGSLAFEEGWRAFSLEHGLEVGDFTLFHYIMGSRF--VVQIYGK 78
                5777777777433...3568***************..99999**************************9976888..9999876 PP
2B338.32.3e-123964583498
                 SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 + ++l+d+ +r W v +  + k g  vlt+GW+ Fvkan ++ gD ++Fk++++ ++  ++v+++r
  Achn274221 396 IVVILRDPVSRLWPVIY--QEKYGLKVLTGGWEAFVKANSIRPGDKCIFKVENEfECI-YRVGIVR 458
                 5799*************..9999999************************87764444.6666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-18181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-15176No hitNo description
SMARTSM010198.8E-6179IPR003340B3 DNA binding domain
PfamPF023622.9E-13178IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-17381IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.023365455IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-11373448IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-10383458No hitNo description
SuperFamilySSF1019361.96E-12385451IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-9396458IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039398459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MFLPPKIART VLHLIDQKIQ LEDARGERWT VTLSKCNGSL AFEEGWRAFS LEHGLEVGDF  60
TLFHYIMGSR FVVQIYGKNG CERLIFSDES SSRKKRRTTR NCSAKAGRYH SIDSDSMNKQ  120
ASTTAVSGSN VEIRRSQPMA TDNALNIDND NERLQHSSRT IYSEEPFYML DGDARNRQED  180
YRNSLYDLSN FEIQRTSAVH ETNRVLVMEE VVRPLGLSDV PYITQTIENV MPIYQKVSDN  240
GNSLSQEQKK KTPSRNDQAL ISPKEENLLM HSFHSAQPKF GGVPKFSGLL ASVQTQNCHS  300
GERMGIVKTE QAEMNKVASD LRKIVNGSYL EIKENCDKDN VCKVVKTEPV YTFELSTTEA  360
VNISFLMATN EQSFAELPTC LASKSFKGWL RMKRMIVVIL RDPVSRLWPV IYQEKYGLKV  420
LTGGWEAFVK ANSIRPGDKC IFKVENEFEC IYRVGIVRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122685.11e-155uncharacterized protein LOC114319826
TrEMBLA0A2R6PDM00.0A0A2R6PDM0_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.18e-09B3 family protein