PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn273621
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 406aa    MW: 46712.6 Da    PI: 4.931
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn273621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39e-16277366198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k +++s+v+   +l lp  f+++h  +   +  +tl de+g++   k+  +k++    l++GW++F+ +++L +gD +vF+l++++ef  +v ++r
  Achn273621 277 FVKPMLQSHVTGGFWLGLPVWFCSNHLPN--HDEFITLLDEEGNESPTKYLAEKSG----LSAGWRGFAIDHELVDGDALVFQLIRHTEF--KVYIIR 366
                 89*********************999433..3346***************656665....9************************98888..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-20271368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-24271368IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-25275366No hitNo description
PROSITE profilePS5086311.279277368IPR003340B3 DNA binding domain
PfamPF023627.0E-14277366IPR003340B3 DNA binding domain
SMARTSM010197.8E-23277368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MYQKEECLSI LRDPEQHEAD IENQNKLDQQ PTVWWHKELA KDVYIADAQD DDAIDDEDVM  60
EIAIEHVRGK PDLLKYFENH VGVFLKRLSA DGRRTLFVDL DSDALKPEGR DTLADDKTNS  120
PFFLSHIRDF SMFLFYIIDP TVHPDFRGGY LAFIPEDEKN LVVYQIEKNE MRILVPATKK  180
YNEIKEAATV RKRLSSAGHT CVHLLPTFHL AVVADEKDKW KNAGAYNIRF IMCSNRTYSY  240
NRRNLANRVY AADEDRQYAI ERAEELQSGL EPDFPSFVKP MLQSHVTGGF WLGLPVWFCS  300
NHLPNHDEFI TLLDEEGNES PTKYLAEKSG LSAGWRGFAI DHELVDGDAL VFQLIRHTEF  360
KVYIIRVNQV EDSDEAADVT DLDVSSTKRI KSSTYTPHLK PCFMR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-58B3 family protein