PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn270801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 154aa    MW: 17845.2 Da    PI: 8.2934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn270801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-051840123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C +Cg s s ks+L++H+ +H
  Achn270801 18 YYCDYCGISRSKKSLLTSHLLSH 40
                89*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-41642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.21840IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8711845IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-54082No hitNo description
Gene3DG3DSA:3.30.160.605.4E-64382IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035566086IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEAVEEKEGP IFRDIRRYYC DYCGISRSKK SLLTSHLLSH HQKSNLQQHV KAVHFALKPF  60
SCSFPGCDMR FSYKHVRDNH EKSGCHVYTE GDFEESDEQV RMRPRGGRKR KCPTIESLVK  120
KRVLPPNQSD SLLTREPEYI SWLLSTEADD HSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026425769.19e-52transcription factor IIIA-like
SwissprotQ84MZ45e-31TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2R6Q4B64e-77A0A2R6Q4B6_ACTCH; Transcription factor IIIA like
STRINGVIT_08s0040g00240.t013e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.19e-33transcription factor IIIA