PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn270051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 750aa    MW: 83323.2 Da    PI: 8.8613
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn270051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.95.5e-086696912345
                 HHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  23 KAeELSvLCdaevaviifsstgk 45 
                 KA+E+++LC+ae+a+++fs+  k
  Achn270051 669 KASEICTLCGAEIAIVVFSPAKK 691
                 9******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0004427.82780661No hitNo description
Gene3DG3DSA:2.40.50.1401.6E-3281185IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502492.79E-2681183IPR012340Nucleic acid-binding, OB-fold
CDDcd043172.10E-5781221No hitNo description
PfamPF013364.8E-1198182IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
PROSITE profilePS5086215.879168653IPR006195Aminoacyl-tRNA synthetase, class II
SuperFamilySSF556817.47E-82202356No hitNo description
Gene3DG3DSA:3.30.930.101.4E-8203247No hitNo description
PfamPF001521.4E-76247656IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
Gene3DG3DSA:3.30.930.102.3E-77248341No hitNo description
PRINTSPR010421.6E-25254266IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
PRINTSPR010421.6E-25271284IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
Gene3DG3DSA:3.30.1360.308.6E-7342359IPR004115GAD-like domain
Gene3DG3DSA:3.30.1360.301.2E-17418535IPR004115GAD-like domain
SuperFamilySSF552611.59E-23419545IPR004115GAD-like domain
PfamPF029387.6E-20432531IPR029351GAD domain
SuperFamilySSF556817.47E-82525673No hitNo description
Gene3DG3DSA:3.30.930.102.3E-77536660No hitNo description
PRINTSPR010421.6E-25572588IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
PRINTSPR010421.6E-25616630IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
PROSITE profilePS500669.335668699IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-10668713IPR002100Transcription factor, MADS-box
PfamPF003193.6E-9669695IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0005739Cellular Componentmitochondrion
GO:0009507Cellular Componentchloroplast
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MSIFLRALPI AALRPKPLSL SSILRLSLNL QTLAKPHIIR IRKSFSVFAS ETQSSSSETV  60
VSKPKKQPQI PCNDSLEWVS RTGLCGELTE DDVGKRIRLC GWVALHRIHG GLTFLNLRDH  120
TGIVQVTTLP DECPDAHSIV SDLRLEYLIS VEGVVRSRPS ESVNKKMKTG MVEVTAEHVQ  180
VLNDVRSKLP FLVTTADDAI DSVKEEIRLR YRCLDLRRPQ MNSNIMLRHR VVKLIRRYLE  240
DVHGFVEPGN FFALPQSPQL YKQLLMVSSF DKYYQIARCF RDEDLRADRQ PEFTQLDMEM  300
AFTPLEDMLR LNEDLIRKVF LEIKGVQLPN PFPRLTYAEA ISRYGSDRPD VRFDLELREA  360
FPGLGTAGHR AVLQHTYKFR DSGVGQNEHK WKGKRVLFMF KSFDSLLGSA GSDRFPRKQV  420
SDIFTDSSFK VFTDALVSGG IIKVLCVPSG AKCYSNTTLK KGDIYSEAIK SGAKGLPFLK  480
VLNDGAIEGI PALISRLDPT KKEQLLTRCS AGSGDLILFA VGNHASVNKT LNRLRVYVAH  540
ELGLIDQALH HPFTAPNPED MKDLSSARAL AYDMVYNGVE IGGGSLRIYK REVQEKVLKT  600
IGISSEQAQA KFGFLLEALD MGAPPHGGIA YGLDRLVMLL AGANSIRDVI AFPKTTTAQC  660
ALTGAPSEKA SEICTLCGAE IAIVVFSPAK KPFSFGHPTV AAVADRFLSC HNLPPPPMPP  720
DSAAARELNE RLTEAVDRLE VERRRVDRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1eqr_A1e-127816672569ASPARTYL-TRNA SYNTHETASE
1eqr_B1e-127816672569ASPARTYL-TRNA SYNTHETASE
1eqr_C1e-127816672569ASPARTYL-TRNA SYNTHETASE
1il2_A1e-127816672569ASPARTYL-TRNA SYNTHETASE
1il2_B1e-127816672569ASPARTYL-TRNA SYNTHETASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:P14868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073014.10.0aspartate--tRNA ligase, chloroplastic/mitochondrial-like
SwissprotF4JJT90.0SYDM_ARATH; Aspartate--tRNA ligase, chloroplastic/mitochondrial
TrEMBLD7T3N60.0D7T3N6_VITVI; Uncharacterized protein
STRINGVIT_03s0088g00500.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-19AGAMOUS-like 61
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Ndimba BK,Chivasa S,Simon WJ,Slabas AR
    Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry.
    Proteomics, 2005. 5(16): p. 4185-96
    [PMID:16254930]
  3. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]