PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn269911

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SRS

Protein Properties

Length: 346aa MW: 37401.1 Da PI: 7.0591

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn269911	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.2	6.2e-66	130	276	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpaakr er qq+++ + +++++kr+r++ + +s+l +t+l+++ s le Achn269911 130 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVKSTWVPAAKRHERLQQQQQD----HLHIHTENPKRQRDN-PSDSSQLVCTRLHTHAS-AGLE 222 5789********************************************8887765....344578899999986.8899999998865.5999 PP DUF702 102 tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+ev+s+a frcvrvss+d+ gee++aYqtav+igGh+fkGiLydqG ++ Achn269911 223 VGEFPAEVNSAATFRCVRVSSIDQdGEEQYAYQTAVNIGGHLFKGILYDQGSDD 276 ******************9879999********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-60	132	275	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	134	176	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-26	226	273	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAAFFSLGGG GRSNNVNLNQ DRQPPPSSSS NLAAAIEMGG DQSWFLNRND INHNSSSSSS 60 YRGFELWQEP PTQHQHPDHM QHHSIISHPL QEFYSSAALG VGPSRRTSIN MFDDESAFLV 120 STRSTSGGGG GGISCQDCGN QAKKDCAHMR CRTCCKSRGF QCPTHVKSTW VPAAKRHERL 180 QQQQQDHLHI HTENPKRQRD NPSDSSQLVC TRLHTHASAG LEVGEFPAEV NSAATFRCVR 240 VSSIDQDGEE QYAYQTAVNI GGHLFKGILY DQGSDDHYMP GPGTNSSSGV GLNLIVATSN 300 TSAAAASTST AAMAVASPAT FIHDLYQPTL NTFISGTHFF PHQRS*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAAFFSLGGG GRSNNVNLNQ DRQPPPSSSS NLAAAIEMGG DQSWFLNRND INHNSSSSSS  60
YRGFELWQEP PTQHQHPDHM QHHSIISHPL QEFYSSAALG VGPSRRTSIN MFDDESAFLV  120
STRSTSGGGG GGISCQDCGN QAKKDCAHMR CRTCCKSRGF QCPTHVKSTW VPAAKRHERL  180
QQQQQDHLHI HTENPKRQRD NPSDSSQLVC TRLHTHASAG LEVGEFPAEV NSAATFRCVR  240
VSSIDQDGEE QYAYQTAVNI GGHLFKGILY DQGSDDHYMP GPGTNSSSGV GLNLIVATSN  300
TSAAAASTST AAMAVASPAT FIHDLYQPTL NTFISGTHFF PHQRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969933.1	2e-93	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	3e-80	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2R6RIR5	0.0	A0A2R6RIR5_ACTCH; Protein SHI RELATED SEQUENCE like
STRING	Gorai.007G198100.1	1e-92	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]