PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn267671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 520aa    MW: 58317.9 Da    PI: 4.5711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn267671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.92.2e-4591371127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                 lp+G+rF+Pt+eelv+++L+ k++g++ e+ + i+ vd++k ePwdLp +  ++++++ew fF++ d+ky+ g+rknrat +gyWkatgkd+ ++s  +
  Achn267671   9 LPVGYRFRPTEEELVNHFLRLKINGDEDEV-SNIRVVDLCKQEPWDLPdMsLIETNDDEWIFFCPIDRKYKIGRRKNRATVAGYWKATGKDRLIKSVkG 106
                 799************************999.77**************96347777899************************************99846 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                  +++g+kktLvfy+grap+g++t+Wv+hey 
  Achn267671 107 MTVIGTKKTLVFYTGRAPNGKNTNWVIHEYC 137
                 6679**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-504160IPR003441NAC domain
PROSITE profilePS5100549.979161IPR003441NAC domain
PfamPF023655.7E-2310136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAILALDSLP VGYRFRPTEE ELVNHFLRLK INGDEDEVSN IRVVDLCKQE PWDLPDMSLI  60
ETNDDEWIFF CPIDRKYKIG RRKNRATVAG YWKATGKDRL IKSVKGMTVI GTKKTLVFYT  120
GRAPNGKNTN WVIHEYCGHI KELDGTKSEQ GSFVLCKLIK RHNKKLDGKP DGNADHSNCD  180
DVEGNVSSPA IDRSFSDIIQ SELVTPMTTA QNEMLPFSSE SCLGEHSNCD NVEGNVSSTA  240
VVRSFSEVIQ SELVSRTTTV QNEMLPFSSE NWLAENCNRT TLDAPLPTES PNNGCIAHDA  300
GDKSTVQTDL DIHEMLKSMF PDPMTDLPDG HDNMLLPLNS QMQVECGSSY NLQVDPMMDH  360
DQKGTKLQYE PNEHDIDDFL NSIIVSLDED CEAPNDVNLT ENVFLMDGIS CSDLDGEVAQ  420
AQNNGRNTPV NLAISARAYR THDFSNEEHS RRLSLPQNES LELHFVSVAS ASDQSYDLFN  480
SPEVSSRKSN SVDSGHMFET GIYIRTRQPR NQPNWRIWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-35816316167NO APICAL MERISTEM PROTEIN
1ut4_B6e-35816316167NO APICAL MERISTEM PROTEIN
1ut7_A6e-35816316167NO APICAL MERISTEM PROTEIN
1ut7_B6e-35816316167NO APICAL MERISTEM PROTEIN
4dul_A6e-35816316167NAC domain-containing protein 19
4dul_B6e-35816316167NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RQJ50.0A0A2R6RQJ5_ACTCH; NAC domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.25e-73TCV-interacting protein