PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn266101
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 469aa    MW: 52592.1 Da    PI: 8.8837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn266101genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.2e-18103190499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +++++ +++++   lp +f++ h   ++++++++ledesg+++e+k+i +k++    l++GW++F+ a++L egD+++F+l+++++f  +v v+r+
  Achn266101 103 KTVTKPSGSKSKHGLPMTFCKLHL--PRKDMKIVLEDESGERFELKFIAEKTG----LSAGWRKFAAAHKLVEGDVLIFQLVETNKF--KVYVVRA 190
                 5556666666668*******8885..46899****************777777....************************998888..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.056100191IPR003340B3 DNA binding domain
SMARTSM010192.7E-15101191IPR003340B3 DNA binding domain
CDDcd100176.16E-19102189No hitNo description
SuperFamilySSF1019365.69E-18103191IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-18103191IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-15103189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MTMSSESVNE GLVVASERKQ SEGIDLDTSS NHHDRTEEVV KKEQSSEWPS SEQSIKSGKD  60
DLTPAQLSKA APRSHSPSYT GKRKKKPKEM HDDFCCQLRK GKKTVTKPSG SKSKHGLPMT  120
FCKLHLPRKD MKIVLEDESG ERFELKFIAE KTGLSAGWRK FAAAHKLVEG DVLIFQLVET  180
NKFKVYVVRA NDLTEVDGAL GLLNLDAHIK QNDAGKDDAD NSEIAPNNKK RKRLKSLPLA  240
VIKKKKKMGL PKSVAKSIQS TKQFENDCEE VHSEVPAGPR HSGSAVHFRD VKSFKDFNIL  300
VEGLCIDSEL PEHIRVKYYA LCCSKNTLIH AHLFRGLNSK LVAGIVCETV NIADAIRACK  360
LTTSRDEYLI WEKTLKSFEL MGMSVGFLRA RLRQLLILAF ESDDARDTRK YLDAKSGKGR  420
AEDEIRDLEA KLVELKQASE KFDADIESLK SKAESFENKF QEEIDAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228246KKRKRLKSLPLAVIKKKKK
2230246RKRLKSLPLAVIKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106376.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2R6PAH70.0A0A2R6PAH7_ACTCH; B3 domain-containing protein
STRINGPGSC0003DMT4000407861e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-24B3 family protein