PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn256561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 516aa    MW: 58064.2 Da    PI: 8.1423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn256561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++Cgks+ +  +L  H+r H
  Achn256561  9 FVCKICGKSCFSGKSLGGHMRGH 31
                89*******************88 PP
2zf-C2H214.20.00013118140123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k F +k  L  Hir H
  Achn256561 118 HKCNKCDKGFDSKKALFGHIRHH 140
                 79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-5533No hitNo description
SMARTSM003550.054931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871936IPR007087Zinc finger, C2H2
PfamPF139127.5E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.09988115IPR007087Zinc finger, C2H2
SMARTSM003550.1688110IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.18E-789140No hitNo description
PfamPF139122.5E-589111IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM003550.0092118140IPR015880Zinc finger, C2H2-like
PfamPF139120.0016118142IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-7364388No hitNo description
PROSITE profilePS501579.993366393IPR007087Zinc finger, C2H2
SMARTSM003550.097366388IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-9366389IPR007087Zinc finger, C2H2
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-7423450No hitNo description
SMARTSM003552.8428450IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-10428451IPR007087Zinc finger, C2H2
PROSITE patternPS000280430450IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MELVQEQKFV CKICGKSCFS GKSLGGHMRG HLPPDSSKKR KNHKKIENLK NSNTGPEADW  60
NASYGLRENP KKSRRGADAK HKISKKHENC IQCEKVFPSL RSLSGHMKAH SIQSREKHKC  120
NKCDKGFDSK KALFGHIRHH SKRPPSESLS DHETFCPVRR KRSRTRYKTN GNFSLCCNLN  180
GFECVSEIGE VEEAAMCLMM MSRGVRNWVN NISVFKSSNS CPETFKAKAL DQCKSGKLCF  240
CSGNSSFEKD KPEFDDLDSG NSSFEAETLL KTSGKFLACG ADEARKMKEL RERLDSGSGN  300
SSFEKEKPEF DDLDSGFLTT DEKNIELERD LVREGEWSHE FGENSCDEIN HTTSETFNDS  360
DKKREYHCKT CDKTFHSYQA LGGHRSVHKT PTNSGFVGKI LTAEMSIETN ENSVEQEEIY  420
ELKKRKDREC PICFKVFPSG QALGGHKRAH YVGFSENKTK EGILTKQCSE LPNVHNTSSD  480
LNVLVTLEEE AGGGFGYKPW WVGSDLGREP LLITN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028108731.11e-139LOW QUALITY PROTEIN: RB-associated KRAB zinc finger protein-like
TrEMBLA0A2R6RKE10.0A0A2R6RKE1_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-20C2H2-like zinc finger protein