PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn247961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ARF | ||||||||
Protein Properties | Length: 358aa MW: 39112.4 Da PI: 8.2141 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.3e-24 | 118 | 219 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 kvlt sd+++ g +++p+++a+ + ++ + tl+++d +g We+++iyr++++r++lt+GW++Fv+ ++L +gD vvF+ ++r+++el+ Achn247961 118 AKVLTASDANNGGGFSVPRTCADLIfpslnfaADPPVQ--TLSIRDVRGVAWEFRHIYRGTPRRHLLTTGWSRFVNHKKLVAGDYVVFM-KNRRSGELF 213 699*******************888*****96555555..8************************************************.4449999** PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ Achn247961 214 VGLRRA 219 ***996 PP | |||||||
2 | Auxin_resp | 82.2 | 1.2e-27 | 266 | 347 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + a+ + +FevvY+P+ ++ +Fvvk+e ve++l+v +++GmR+kma+e+ed+s ++ +Gtv++ d+ W +S+Wr+L+ Achn247961 266 ELAARGLAFEVVYYPKRGSVDFVVKAETVEESLNVFWTAGMRVKMAVESEDASGVKWfQGTVSSAMVPDNGPWLGSPWRMLQ 347 5688899*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-32 | 115 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-28 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.23E-19 | 116 | 218 | No hit | No description |
SMART | SM01019 | 3.0E-15 | 117 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.858 | 117 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 118 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.4E-25 | 265 | 347 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAADTGVDPT VWKACAGTSV RIPTVDSRVY YFPQGHAEHF SSPPFLSPIV SSQPLILCRV 60 AAVRLLANPE TDEVFAKIRL VPIDPARDIH ALERKLGFSG GSNAEEENGE EAVVSSYAKV 120 LTASDANNGG GFSVPRTCAD LIFPSLNFAA DPPVQTLSIR DVRGVAWEFR HIYRGTPRRH 180 LLTTGWSRFV NHKKLVAGDY VVFMKNRRSG ELFVGLRRAV RTDAKCGGRW NFPVTEDDGF 240 SGGGKEGFSR SGRGMVSSES VVLEAELAAR GLAFEVVYYP KRGSVDFVVK AETVEESLNV 300 FWTAGMRVKM AVESEDASGV KWFQGTVSSA MVPDNGPWLG SPWRMLQVCL SHYLGRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 7e-57 | 11 | 348 | 23 | 333 | Auxin response factor 1 |
4ldw_A | 7e-57 | 11 | 348 | 23 | 333 | Auxin response factor 1 |
4ldw_B | 7e-57 | 11 | 348 | 23 | 333 | Auxin response factor 1 |
4ldx_A | 7e-57 | 11 | 348 | 23 | 333 | Auxin response factor 1 |
4ldx_B | 7e-57 | 11 | 348 | 23 | 333 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028091086.1 | 1e-172 | auxin response factor 17 isoform X1 | ||||
Refseq | XP_028091087.1 | 1e-173 | auxin response factor 17 isoform X2 | ||||
Swissprot | Q84WU6 | 1e-112 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A2R6Q169 | 0.0 | A0A2R6Q169_ACTCH; Auxin response factor | ||||
STRING | XP_010277676.1 | 1e-141 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-111 | auxin response factor 17 |