PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn244501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 965aa    MW: 109766 Da    PI: 7.0753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn244501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+ksFs+  ++  H+r H
  Achn244501 71 FVCKICSKSFSNGKSMGGHMRGH 93
                89******************988 PP
2zf-C2H212.70.0004174195223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C+ Cgk F +   L  H+r H
  Achn244501 174 VCKECGKGFGSMRALFGHMRHH 195
                 6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-46795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-56896No hitNo description
PfamPF139129.9E-77194IPR007087Zinc finger, C2H2
SMARTSM003550.0257193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5967198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM003550.027144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138144171IPR007087Zinc finger, C2H2
PfamPF139121.8E-7145167IPR007087Zinc finger, C2H2
SuperFamilySSF576677.46E-9145195No hitNo description
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4146167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.605.3E-4170197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.028173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512173200IPR007087Zinc finger, C2H2
PfamPF139125.8E-6175197IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-6392416No hitNo description
PfamPF139123.2E-7394417IPR007087Zinc finger, C2H2
SMARTSM003550.065394416IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118394421IPR007087Zinc finger, C2H2
PROSITE patternPS000280396416IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-6443470No hitNo description
PROSITE profilePS501578.974448470IPR007087Zinc finger, C2H2
PfamPF139122.9E-12448471IPR007087Zinc finger, C2H2
SMARTSM003550.18448470IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280450470IPR007087Zinc finger, C2H2
PfamPF015012.8E-87605937IPR002495Glycosyl transferase, family 8
CDDcd064291.92E-87639951No hitNo description
SuperFamilySSF534481.83E-58639708IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.102.2E-72641710IPR029044Nucleotide-diphospho-sugar transferases
SuperFamilySSF534481.83E-58751961IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.102.2E-72753960IPR029044Nucleotide-diphospho-sugar transferases
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MPLKVRFCND VGLRSHELLC VIREFILSTR GSDFATNHGI SHVQATRFGF LLLDSLLFSD  60
QLMEEDQEQK FVCKICSKSF SNGKSMGGHM RGHLGSISAK KHDEEEHNET GFEDGDDSGY  120
VLRENPKKTW RVSDSKHGSE RNQNCCKQCG KVFPSLRALS GHMRCHSIKE RENVCKECGK  180
GFGSMRALFG HMRHHSKRPR VQLDRENLGP IQRKRSKKAS YKAGGNFSLS NSNASCSYVS  240
DNDVELEEAA KCLIMLSRDE RNVFESNSML ESSENDSVIV DKAKALHQSE GNSGYADETW  300
MSEKLDSGVS GSWNSSCEKE ESEFRDLGSG FLIKYEKKDE FEVSIDGFCK DSENEIVLLN  360
AGTELDQATF DVQAPELGGK NSEFFEDLEK KREYQCRTCN KMFDSYQALG GHQTSHRTNS  420
AEASAKLEWH ENLADQNTSY ESKKSKDHEC PICLKVFPSG QALGGHKRAH YIGLTENTNK  480
ECVLTKQELP DKHIDCDLNV PISLEKDVGV GVDVGFKPWW QKLVRDFYKI LNQVSTEEIP  540
DDLKLPESFG QLVSEMKSKK YKAKDFALII KGMMERSERE MRESKFAELM NKHFAASAIP  600
KGIHCLSLRL ADEYSSNAHA RRQLPSPELL PLLSDNSYYH FVLSSDNILA ASVVVTSAVQ  660
SSLKPEKMVF HVITDKKTYA GMHSWFALNP LSPAIVEVKG VHQFDWLTRE NVPVLEAVEN  720
HYGIRKYYHG NHIAGANLNE ITPRIFASKL QARSPKYISV LNHLRIYLPE LFQSLDKVVF  780
LDDDVVVQRD LSPLWEIDLG GKVNGAVETC KGEDDWVMSK RFRNYFNFSH PLIEKHLNPD  840
ECAWAYGMNI FDLHAWRKTN IMHTYHTWLK ENLKSNLTMW KLGTLPPALI AFKGHVRAID  900
PSWHMLGLGY QNKTNIESVK KAAVIHYNGQ SKPWLEIGFE HLRPFWTKYI NYSSDFIRNC  960
HILE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-44C2H2-like zinc finger protein