PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn242211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20458.2 Da PI: 6.7792 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.1e-09 | 4 | 27 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w++ Achn242211 4 RWSLIAGRLP-GRTDNEIKNYWNTT 27 4*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.954 | 1 | 32 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-7 | 3 | 33 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 3 | 28 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-6 | 4 | 28 | No hit | No description |
Pfam | PF00249 | 1.7E-6 | 4 | 27 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLSRWSLIAG RLPGRTDNEI KNYWNTTLGK KIRPQTSRES SKNNLTRKSK GKQPVIPPPP 60 SAIRTKAVRC AKLLAPAKSP PTLGPLFLNQ PVEKSFAVLE ENQSQISKNP LLCVENSHGT 120 EPLEFSFHDQ FHHNNGLCLE GLDDHDMVFK DWTASHEFLE VEGNCTLDLE SLASLLDCEE 180 WP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6PN00 | 1e-127 | A0A2R6PN00_ACTCH; Anthocyanin regulatory C1 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-15 | MYB family protein |