PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn239071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 521aa    MW: 57280.4 Da    PI: 5.5774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn239071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07100126128
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIa 28 
                      r rWT eE++++++a k++G   W++I 
       Achn239071 100 RERWTGEEHKKFIEALKLYGRA-WRRIE 126
                      78******************88.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-694128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-4100128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAISRCRLTP FDLLLASTTF DAFTGEIEVV REGVEMVSAA MAIQDQIGGT QSNAVLSKGN  60
PNLVDVGVSC VKGGQLKEQF PSGNDFSLKV RKPYTITKQR ERWTGEEHKK FIEALKLYGR  120
AWRRIEGLLL FQYTFSTYHF MYMLSFEVVR ESSTSDADSL KPIEIPPPRP KRKPMHPYPR  180
KLLASLKTGP PVPEQLRRST STNLSDSEQD NQSPTSVLSA IGSETLGTTD SNSPNGSLSP  240
ISSAAGVNPG DFFNEPNSSP EETASPLLVH LTASSSPDEQ SDEHFAMKLE LFLQDTAVVK  300
GPAEAACALS LKLFGKTVFV TDSHRPSSPT MRTCKSSPCD TANTLPWNSF PAEFSSREIE  360
GTWNPLASRA PAALYCMQFP NGNSNPEYDG SSPCLPWLPF YGGMQFPCFP VPNPVPAKEN  420
PSYCSEHTED GEVQKEGSWT GSNTGSVNTG DKNWEAETQS RFLSLDKKEN AQQPELLCKP  480
SPGKRLKGFV PYKRCLAERD AQSSAIFCEE REEQRVRLCL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094872.10.0protein REVEILLE 1
TrEMBLA0A2R6S2W70.0A0A2R6S2W7_ACTCH; Protein REVEILLE like
STRINGVIT_04s0079g00410.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-43MYB_related family protein