PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn231181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 642aa    MW: 73624 Da    PI: 8.2453
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn231181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.7e-2154147190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a l+++k++     +w+vt + ++HnHel 
  Achn231181  54 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYLRISKTTelgAPEWRVTGFANHHNHELL 147
                 6**************9998877356667999***************999**********************99888889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1754147IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20270361IPR018289MULE transposase domain
PfamPF044342.2E-7545579IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.705548581IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MVLYDDPSDQ RSLSLDDTSS TEESPDETRL SLETANDAVP YLGQRFGTHD AAYEFYSEFA  60
KRCGFSIRRH RTEGKDGVGK GLTRRYFVCH RAGNTPVKTS NENKPQRNRK SSRCGCQAYL  120
RISKTTELGA PEWRVTGFAN HHNHELLEPN QVRFLPAYRT ISDTDKSRIL MFAKTGISVQ  180
QMMRLMELEK CVEPGYLPFT EKDVRNLLQS FRKVDPEDES IDLLRMCRNI KDKDPNFRFE  240
FTLDLNNRLE NIAWSYASSV QSYEIFGDAV VFDTTHRLTA FDMPLGIWVG VNNYGMPCFF  300
GCVLLREENL RSFSWALKAF LSFMSGKAPQ TLLTDQNMCL KEAIAMEMPA TKHALCIWMI  360
VAKFPSWFNA VLGERYNEWK AEFYRLYNFE ATEDFEPGWR AMVNSFGLHT NRHITNLFAL  420
RSLWALPYLR SHFFAGMTTT GQSKSINAFI QRFLSAQTRL AHFVEQVAVA VDFKDQAGEQ  480
QTMQQNLQNI CLKTGAPMES HAATILTPFA FSKLQEQLVL AAHYASFRVE DGFLVRHHTK  540
LDGGRKVYWV PREGIISCSC HQFEFSGILC RHALRVLSTG NCFQIPDRYI PLRWRRINIP  600
STKLLHCTPN DHGERVQLLQ SMVSTLITES AKSKDRLDMA T*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079946.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_028079947.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2R6Q6W70.0A0A2R6Q6W7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]