PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn230231

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SRS

Protein Properties

Length: 285aa MW: 31894.5 Da PI: 8.2165

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn230231	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201	3.7e-62	76	218	3	152
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g+++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+paakrrer q ++++++++ ++++ s r++ ++++ ssa ++ le Achn230231 76 GGGVNCQDCGNQAKKDCPYWRCRTCCKSRGFECQTHVKSTWIPAAKRRERLQLVDSLQQHQQQFQQQQMSFRNE--------IPKRQRESSALLRSGLE 166 5789***********************************************999987776544444443333........33444444555567799 PP DUF702 102 tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGl 152 + ++P e +seavfrcvrvss +d ++++laYqtav+igGhvfkGiLydqG+ Achn230231 167 VGHFPVEYNSEAVFRCVRVSSTNDaDHNQLAYQTAVNIGGHVFKGILYDQGP 218 99******************55678********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.5E-60	78	218	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.4E-27	80	122	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.0E-25	169	218	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSGFFSLGGK EEEITTTNSL FSLRNEEIYN KGFELWQQHY HLHQQKLHQL QEKDFAGLSS 60 DEQYRSRVMR QGRVRGGGVN CQDCGNQAKK DCPYWRCRTC CKSRGFECQT HVKSTWIPAA 120 KRRERLQLVD SLQQHQQQFQ QQQMSFRNEI PKRQRESSAL LRSGLEVGHF PVEYNSEAVF 180 RCVRVSSTND ADHNQLAYQT AVNIGGHVFK GILYDQGPYG GGESSSGGGG GGEGLPNLIT 240 EATTTATVAT TSYHQGVNML DPSLYSAPLN AFMTGTQFFP PPRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022894528.1	1e-104	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	2e-66	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2R6PZQ4	1e-179	A0A2R6PZQ4_ACTCH; Protein SHI RELATED SEQUENCE like
STRING	VIT_18s0001g13420.t01	9e-89	(Vitis vinifera)
STRING	XP_009599252.1	1e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-59	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]