PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn229421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 298aa MW: 33631.7 Da PI: 6.2869

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn229421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.2	3.5e-33	156	213	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts+ C+vkk+vers dp++v++tYeg+H+h+ Achn229421 156 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTACHVKKRVERSMCDPSMVVTTYEGKHTHP 213 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-33	140	213	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-28	148	214	IPR003657	WRKY domain
PROSITE profile	PS50811	30.986	150	215	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	155	214	IPR003657	WRKY domain
Pfam	PF03106	6.3E-26	156	213	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MESKNMVKLE DSILPFPFSY HFPASYMTST GMWDFSCELG DNSSLGFMEF LDVQDSTPSI 60 FDILQFSTPT HDQISLAPKP SEVVNQPTTP NSSISSASND EQISKGVDHE KEEEEEEEEE 120 KQKTQKKQLN PRKKCEKSKR EARFAFTTKS EVDHLEDGYR WRKYGQKAVK NSPFPRSYYR 180 CTSTACHVKK RVERSMCDPS MVVTTYEGKH THPITFMSRQ AASTGLPPPG PSFFGAASFA 240 PQGPFFPHHS QFSANFGYIN PTITSVHERC FWTPTSALLT DHGLLQDMIV PSIVKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	148	214	10	76	Probable WRKY transcription factor 4
2lex_A	2e-26	148	214	10	76	Probable WRKY transcription factor 4
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF051079	3e-43	EF051079.1 Populus tremula x Populus alba clone 717 1B-4 WRKY transcription factor (WRKY23) mRNA, complete cds.
GenBank	GQ377453	3e-43	GQ377453.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 33 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021654615.1	1e-78	probable WRKY transcription factor 23 isoform X1
TrEMBL	A0A2R6PNZ9	1e-156	A0A2R6PNZ9_ACTCH; WRKY transcription factor 23
STRING	VIT_05s0077g00730.t01	2e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	6e-48	WRKY DNA-binding protein 23