PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn228911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 188aa MW: 20672.7 Da PI: 10.6389 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 206.5 | 2.8e-63 | 20 | 187 | 130 | 301 |
GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228 + +++ e++++++k+kk++ kr+++ p++ +++ +kkk+++s+k++++ + k e+k+++ + n+ ++D st+P+P CsCtG r+CYk G G Achn228911 20 QPEKSTDFETKPPKVKKKKSTTKRSNQFAPRVWEKQ-PKKKPSASRKTKTQFE--AGIKVERKNLNAGSNESKWDFSTVPPPYCSCTGDARVCYKCG-G 114 344566677888888888888888888888876655.4554666644444444..579*************************************99.9 PP GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GWqS+CCt++iS yPLP s++++gaR++grKm +ga+ lL +La+eG dls+pvDLkdhWA+ Gtn fvti+ Achn228911 115 GWQSSCCTINISEYPLPKSPTKPGARVSGRKMTSGAYGNLLHRLASEGRDLSHPVDLKDHWARLGTNNFVTIK 187 ************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.9E-41 | 1 | 187 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.8E-56 | 16 | 187 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDPKPPIAAV PIRSVAPTTQ PEKSTDFETK PPKVKKKKST TKRSNQFAPR VWEKQPKKKP 60 SASRKTKTQF EAGIKVERKN LNAGSNESKW DFSTVPPPYC SCTGDARVCY KCGGGWQSSC 120 CTINISEYPL PKSPTKPGAR VSGRKMTSGA YGNLLHRLAS EGRDLSHPVD LKDHWARLGT 180 NNFVTIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028058471.1 | 2e-73 | protein BASIC PENTACYSTEINE7-like | ||||
Swissprot | O82286 | 2e-51 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A2R6PIK7 | 1e-135 | A0A2R6PIK7_ACTCH; Protein BASIC like | ||||
STRING | Gorai.008G222300.1 | 1e-67 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13714 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 2e-53 | basic pentacysteine 7 |