PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn227901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 650aa    MW: 73979.5 Da    PI: 7.3405
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn227901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10193286184
                 EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+ +ltpsdv  ++ l +p + a +h         g   +++ ++++ + s   + W ++li+  +++++++t+GW++Fv+  +L++ D + F++
  Achn227901 193 FKMQLTPSDVEDRR-LLIPFDIAGNHlppavvaipGRAGTSQYEIVISNASAqnNDWIMTLIHHPGKQAFMITRGWQGFVDWYNLEAMDLIRFYR 286
                 66789999999885.********9999999999994444467788888855555***************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-5129187IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-11188288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-12190288IPR015300DNA-binding pseudobarrel domain
CDDcd100176.54E-6192286No hitNo description
PROSITE profilePS508638.191192306IPR003340B3 DNA binding domain
SMARTSM010190.1193295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-7381479IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3385493IPR003340B3 DNA binding domain
CDDcd100171.86E-6385491No hitNo description
SuperFamilySSF1019365.89E-8397480IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.628440493IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-8504596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-10505598IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0088507613IPR003340B3 DNA binding domain
CDDcd100171.69E-8507601No hitNo description
PROSITE profilePS508638.247548618IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGIKHLRPIV PTKEMRNHFP VVGIPAETHG MERLYFTYAQ NKPLHSWNLL TEFVKGGETE  60
TDQAQSGLQE TMEEVEATEE KAVANLVIAQ VEAVTDDVMV EEGVTVVARR KSFNRDPNPT  120
KVGSNMGIFL FEVYLTPKDV QLDRLSIPME QALDHFPPLA DRRDNYDEKI KISDPENFHL  180
NMTLRFSERI ALFKMQLTPS DVEDRRLLIP FDIAGNHLPP AVVAIPGRAG TSQYEIVISN  240
ASAQNNDWIM TLIHHPGKQA FMITRGWQGF VDWYNLEAMD LIRFYRPEPQ KPDGGDDTQG  300
DGGSSKGKEI AVGLGPLAPI PKQKRTKFAR LSDLLRRKCS NRDKIGGERA LYLLSTAAQY  360
VSGSIPKARS TYKKPIKPIQ LQFVFEQILR YPDDMFFAIP NDIAEAHFPS LPFRESGDLY  420
RFENLGFLDV QPSELPRMIW PIEFVRLYSI DTYVFIKGWK EFVTAHKWKE GDAIHFYKSA  480
EPYSYEFYYI SCVKAIELYG FALNQWFQKK LTKSDDLINA LQISPAEGEK HFRSLKYPDG  540
AGYYKKEKLL VSDPENTGWP MEIRFLPGYN DYIIFGNWSR FVATHKLKPP DVIRLFKVVK  600
NAAHKNHYVI DYVLVNKAVT SEISPVGPGK EGKHNCGGSS QKHGDVDKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-07RAV family protein