PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn224681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 994aa MW: 111791 Da PI: 6.1761

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn224681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.4e-16	129	203	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++ C+a+l++++++ + w vtk++++HnH+++ Achn224681 129 FYDAYARRVGFSTHVGQYSRTKPDGPIVTWDFACSREIFKRKNVES--------------CNAMLRIERKDPDSWIVTKFVEDHNHSIV 203 9*************************************998877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-13	129	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-30	335	427	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.399	612	648	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-11	614	646	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-8	623	650	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence Send to blast
MAAATTTVPS SEYNSERERV LNSSEIRSTK LDLCPNSKNP LDRESERARE GFDLYATDKA 60 AAGMDVGVDG AEGEKREKHG KANISRNMGE KQGMAENSSD REAHNQDDDE NTKLHVGMEF 120 ESEDAAKTFY DAYARRVGFS THVGQYSRTK PDGPIVTWDF ACSREIFKRK NVESCNAMLR 180 IERKDPDSWI VTKFVEDHNH SIVSPRKVHH LRPRRHFAGV TKNLVETVDA PCDVFVSMDG 240 NQVSYHPNRG VRSASPVEMN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN YFKKMQAENP 300 GFYYAIQLDD DNCMTNIFWA DARSRTAYSH FGDAVIFDTM YRPNQFLVPF APFTGVNHHG 360 QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVT QVFPETRHCI 420 CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWSSLLDR YELRKNEWLQ 480 AVYNARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT SIPMFFKQYE RALENSLERE 540 IEADYDTICT MPVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN IEGDGVVSKF 600 RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCKHI LTVFTVTNVL TLPSHYILNR 660 WTRNARICFG SMEHDANNQC IETLTSRFKN LCREAIKYAE EGAIAAETYN AAMTALRDGA 720 RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDMS PPLWPWQDVM PQHFNLNDVG 780 VSIADLNQPT IAPDSVTRDG GPDKPVVLTC FKSMTWVIED KNSTSSKVAL INLKGSDGGY 840 NVEIVVVGLG CLGLCWLCFW CSGDDGDGVG GRVVHCRVAA MVLVMEWQSN FCGGDGYNGG 900 GIVGVVMLQD YSKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSASANR VAVINLKLQD 960 TKATTGETEV KFQVSRDTLG SMLRSMEYIR EQL*

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence Send to blast

MAAATTTVPS SEYNSERERV LNSSEIRSTK LDLCPNSKNP LDRESERARE GFDLYATDKA  60
AAGMDVGVDG AEGEKREKHG KANISRNMGE KQGMAENSSD REAHNQDDDE NTKLHVGMEF  120
ESEDAAKTFY DAYARRVGFS THVGQYSRTK PDGPIVTWDF ACSREIFKRK NVESCNAMLR  180
IERKDPDSWI VTKFVEDHNH SIVSPRKVHH LRPRRHFAGV TKNLVETVDA PCDVFVSMDG  240
NQVSYHPNRG VRSASPVEMN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN YFKKMQAENP  300
GFYYAIQLDD DNCMTNIFWA DARSRTAYSH FGDAVIFDTM YRPNQFLVPF APFTGVNHHG  360
QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVT QVFPETRHCI  420
CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWSSLLDR YELRKNEWLQ  480
AVYNARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT SIPMFFKQYE RALENSLERE  540
IEADYDTICT MPVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN IEGDGVVSKF  600
RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCKHI LTVFTVTNVL TLPSHYILNR  660
WTRNARICFG SMEHDANNQC IETLTSRFKN LCREAIKYAE EGAIAAETYN AAMTALRDGA  720
RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDMS PPLWPWQDVM PQHFNLNDVG  780
VSIADLNQPT IAPDSVTRDG GPDKPVVLTC FKSMTWVIED KNSTSSKVAL INLKGSDGGY  840
NVEIVVVGLG CLGLCWLCFW CSGDDGDGVG GRVVHCRVAA MVLVMEWQSN FCGGDGYNGG  900
GIVGVVMLQD YSKTPSGETE VQFRLTRVTL EPMLKSMAYI SQQLSASANR VAVINLKLQD  960
TKATTGETEV KFQVSRDTLG SMLRSMEYIR EQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099450.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6RDW3	0.0	A0A2R6RDW3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_13s0047g00330.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]