PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn224361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 125aa MW: 13762.4 Da PI: 8.2264 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3e-26 | 9 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fss +gk +eyss Achn224361 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSsSGKHFEYSS 60 68**************************************752799999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.59 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-36 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.80E-34 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-28 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-25 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS SSGKHFEYSS 60 SSLYGSWNIW LKVTKASHAQ KHIAADSENM LYEEGQSSES VSNICHSSGP PQDYESSDTS 120 LKLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 63 | 1 | 62 | MEF2C |
5f28_B | 2e-17 | 1 | 63 | 1 | 62 | MEF2C |
5f28_C | 2e-17 | 1 | 63 | 1 | 62 | MEF2C |
5f28_D | 2e-17 | 1 | 63 | 1 | 62 | MEF2C |
6byy_A | 2e-17 | 1 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 77 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 1 | 63 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 1 | 63 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 1 | 63 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 1 | 63 | 1 | 62 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022751127.1 | 2e-47 | MADS-box protein SVP-like isoform X2 | ||||
Swissprot | Q9FUY6 | 5e-31 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
Swissprot | Q9FVC1 | 3e-31 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A444FF25 | 3e-40 | A0A444FF25_ENSVE; Uncharacterized protein (Fragment) | ||||
STRING | XP_009783886.1 | 2e-31 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-33 | MIKC_MADS family protein |