PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn217881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HD-ZIP

Protein Properties

Length: 267aa MW: 30453.3 Da PI: 4.3407

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn217881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	40	93	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k Achn217881 40 KKRRLSPDQVRFLERSFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWK 93 56689************************************************9 PP
2	HD-ZIP_I/II	127.7	5e-41	39	129	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qv++LE+sFe e+kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy+aL +++++l++e + L +e+e+L++e+ Achn217881 39 EKKRRLSPDQVRFLERSFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYQALESSFNSLRAEYDGLLEEKEKLKSEV 129 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-19	25	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	35	95	IPR001356	Homeobox domain
SMART	SM00389	9.4E-20	38	99	IPR001356	Homeobox domain
Pfam	PF00046	9.3E-17	40	93	IPR001356	Homeobox domain
CDD	cd00086	1.06E-17	40	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-20	41	102	IPR009057	Homeodomain-like
PRINTS	PR00031	9.9E-6	66	75	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.9E-6	75	91	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.1E-12	95	136	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVSFEDVHGG KRSTRSFFSS FDQEENADEG LDEYFNQPEK KRRLSPDQVR FLERSFEVEN 60 KLEPDRKIQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YQALESSFNS LRAEYDGLLE 120 EKEKLKSEVL NLADKLLLKQ KQNGNSEPED TNQNLQAPPE GTVDSAMACK QEDLSSAKSD 180 VLDSDSPRYA DGGHSSLLEP GDSSYVLEPD QSDLSQDEED NFSKKLFPPP EYVFPKNEDA 240 DYPNPPSNSG YYGFPVEDHA FGFWSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	95	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088415.1	1e-140	homeobox-leucine zipper protein HAT5-like
Swissprot	Q02283	2e-43	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A2R6PE55	0.0	A0A2R6PE55_ACTCH; Homeobox-leucine zipper protein
STRING	EOY21713	1e-131	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-42	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]