PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn216471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23759.5 Da PI: 6.0373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.2e-18 | 50 | 97 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr ++ +g+Wv+eIr p++ + r++lg++ t+e+Aa+a++ a+++ Achn216471 50 IYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYATPEMAARAHDVAALSV 97 69****998.**********843...6*********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.49E-31 | 49 | 107 | No hit | No description |
Pfam | PF00847 | 9.5E-13 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-31 | 50 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-36 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.629 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MLIFNTSKIG KREEESSSES THSQSNSPKT QKPGGNRPKR PRERNNKHPI YRGVRMRSWG 60 KWVSEIRQPR KKSRIWLGTY ATPEMAARAH DVAALSVKGD SAILNFPQLT ESLPRPASLS 120 PSDIQAAAAK AAAMEHLSPL ASSSSDESIV TNTSSEELGE IIELPSLEGD FDSAESRAEL 180 VMVDSVDGWL DFDFFGYYSD HTVMADSMIP SNLYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 47 | 108 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097122.1 | 1e-88 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 8e-57 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2R6QFK5 | 1e-131 | A0A2R6QFK5_ACTCH; Dehydration-responsive element-binding protein | ||||
STRING | XP_006426907.1 | 5e-68 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-52 | ERF family protein |
Publications ? help Back to Top | |||
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