PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn214311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 487aa MW: 54865.9 Da PI: 4.5047 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 138.9 | 5.1e-43 | 124 | 485 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL +c ea++ ++++l++ +L rl+e a p+g++ qRl+ y+ + L + r ++ aa+++f++++P+ +f+h++aN+ Achn214311 124 RHLLKACGEAMEIQNTHLVEVILRRLEEKACPRGSTAQRLVYYLIQWLDEDFDR-------------------KNYEAAFRAFYQIFPYGRFAHFVANS 203 89**********************************************999998...................223467899***************** PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194 Ileav ++ er+ i+Dfd+++G+QWp+L++aL s+ +g +++i v+ ++ + s ++ e+t+erL + A++ gv++e + ++e l e+ Achn214311 204 SILEAVPEDaERIRIVDFDMGEGVQWPPLIEALGSQHRGVRQIQIVSVKIEDFNsmpSLQSFEKTKERLCEHASSSGVQLEVAEV---DMEGLVSEMKk 299 ******8877*************************************999766678899999*******************9998...45555333331 PP GRAS 195 ..rvkpgEalaVnlvlqlhrlldesvsles.......erdevLklvkslsPk.vvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eer 282 ++ ++E+la n+++ l ++++++ s + + + L+ ++++++ ++++ + + + F f l +al++s+e ++p++ e+r Achn214311 300 teECGRRECLAFNCMVGLPHMPRQRSSRHVeeflklaQESIGLRSCNGIRSNgILTFGDGQTMSDYRGFGSFFEAQLGRATALLESMEGQIPSHLkEAR 398 115566****************6665554422333322334456666787765889999999999**************************9987699* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 i +E ++++ ++++v+ e+ae er r rl + + + ++s +++++ak l+r+ +s y + e+++++vl+ + pLv vS+W Achn214311 399 IAMECLFVAPYVSSLVCFEKAE--ERDS-----RGRLpPKIALDARRMSIDTVAEAKELVREGDS-LYWIGtegESENQVVLCFLGSPLVRVSSW 485 *********************9..4444.....3333146889999***************9994.487775567899***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.647 | 97 | 464 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-40 | 124 | 485 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MHHPPWSYSS LDEVGFHVLD MDSDCANFGF SYSFISPPIN YESQSFQNLE ESTSSEKQSF 60 DEVEGFLNWM EIESGPSSLC PTEETEGTSP SMSSREASMD VSSPEKPLVF PWEDMALGYE 120 LSIRHLLKAC GEAMEIQNTH LVEVILRRLE EKACPRGSTA QRLVYYLIQW LDEDFDRKNY 180 EAAFRAFYQI FPYGRFAHFV ANSSILEAVP EDAERIRIVD FDMGEGVQWP PLIEALGSQH 240 RGVRQIQIVS VKIEDFNSMP SLQSFEKTKE RLCEHASSSG VQLEVAEVDM EGLVSEMKKT 300 EECGRRECLA FNCMVGLPHM PRQRSSRHVE EFLKLAQESI GLRSCNGIRS NGILTFGDGQ 360 TMSDYRGFGS FFEAQLGRAT ALLESMEGQI PSHLKEARIA MECLFVAPYV SSLVCFEKAE 420 ERDSRGRLPP KIALDARRMS IDTVAEAKEL VREGDSLYWI GTEGESENQV VLCFLGSPLV 480 RVSSWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-11 | 130 | 284 | 26 | 191 | Protein SCARECROW |
5b3h_A | 2e-11 | 130 | 284 | 25 | 190 | Protein SCARECROW |
5b3h_D | 2e-11 | 130 | 284 | 25 | 190 | Protein SCARECROW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028108393.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2R6QST8 | 0.0 | A0A2R6QST8_ACTCH; Nodulation-signaling pathway 2 protein | ||||
STRING | cassava4.1_032945m | 1e-128 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 3e-19 | GRAS family protein |