PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn211241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 606aa    MW: 70866.9 Da    PI: 7.8947
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn211241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.48.2e-1242136177
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwe 77 
                 k+Y++Y+++ GF + +++s+k  +r++ +t+  fvC keg   ++  k                 +k++r+ ++ ++gC+a+l++k++k + kwe
  Achn211241  42 KYYEDYGRQNGFWIHTQTSSKGqNRSNDVTSVLFVCAKEGIYVPKVLKdgvegnddreeddkllLKKRKRSYSTAKCGCNAHLRIKRDKwSLKWE 136
                 69************99888876477888*************999998899*************9999999999***************9888987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-942136IPR004330FAR1 DNA binding domain
PfamPF105518.6E-21136200IPR018289MULE transposase domain
PROSITE profilePS509669.495368404IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-4377400IPR007527Zinc finger, SWIM-type
SMARTSM005758.7E-4379406IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEESFGLDAF EVEDLQTTNN DVERLEAPSI GMSFETIEEA RKYYEDYGRQ NGFWIHTQTS  60
SKGQNRSNDV TSVLFVCAKE GIYVPKVLKD GVEGNDDREE DDKLLLKKRK RSYSTAKCGC  120
NAHLRIKRDK WSLKWEFGYA LLQDETELTF LWLFETWLEA MGGRAPTSII TDQDLAMKGA  180
IAKVFPNTRH RLCIWHIKKK FVEKLSQVYY KRSKFKKELK NCIWKTYRKE DFEERWMTLI  240
KEYGLETNEW LQQLYDIRES WVPVYNRGTF FAGMNTTGRK FVVKYEQDLK KIVKRESDED  300
FESEHKFRIV NENEFLLKHA AKVYTRHVFN KFKDEINEIF RYKVEDVGDT KRCQSFIVKS  360
KVYEIEKFIM TLDSQTYEGR CECQKFEFVG ILCTHILKIF VRLDIDAIPD HFILPRWRQK  420
ANKFRIIDSE ELVHDDGKED SEALRLSHMC QESTKLACLA APSNEAYTIY IETMNGLFEK  480
LIKVTSYVPP MDVCLEEDNV HTTELSQILI SDPNISQTKG RKKDATGKGA SIHFGRLKSG  540
IEMALNKKKR RCNLCNKLGQ DKRTCPENPM SKTYKDIPTV HDNEIGRDES QKTRCRNVDV  600
ASFAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111KKRKRS
2210216KRSKFKK
3546550KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412171.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_020417035.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-61FAR1-related sequence 3