PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn209551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 133aa    MW: 15055.6 Da    PI: 4.1686
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn209551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.77.6e-084298148
        FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk........t 48
                k+Y+eY+++ GF + +++s+k  +r++ +t+  fvC  egk  ++ +k        +
  Achn209551 42 KYYEEYGQQNGFWIHTQTSSKGqNRSDDVTSVLFVCAIEGKYVPKAEKdgvegndeK 98
                69************99888776478889*************9999888665544331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-54298IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEESFRLDEF EIEDLNTPNN DMEKLETPSS GMSFETIEEA RKYYEEYGQQ NGFWIHTQTS  60
SKGQNRSDDV TSVLFVCAIE GKYVPKAEKD GVEGNDEKTE DDKELPNKRK KFVLLLNVDA  120
TLIYGLSVTN GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219733.28e-24PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6R5G61e-38A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGEMJ101656e-23(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.14e-07FAR1-related sequence 10