PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn209361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 345aa    MW: 38617.1 Da    PI: 8.4342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn209361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.2e-1643127186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v +L+ea++ ++   +r+klk+++We+v++++    +e++ +++++qCk+k+e+++kry+ + +  ++      s++p+f +l+
  Achn209361  43 EWSEGAVSTLLEAYEAKWVLRNRAKLKGQDWEDVARHVstraSETKSTKTQTQCKNKIESMKKRYRSESAAVSEA-----SSWPLFPRLD 127
                 5*************************************999999999********************99999874.....57****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1941127No hitNo description
PROSITE profilePS5135212.449195344IPR013766Thioredoxin domain
SuperFamilySSF528331.88E-23241343IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.40.30.105.2E-22241343IPR012336Thioredoxin-like fold
PfamPF000855.0E-18242323IPR013766Thioredoxin domain
CDDcd029471.51E-20244341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045454Biological Processcell redox homeostasis
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPNKPNPSP LTPNTRTHKE DSPRKPPPLA AGGSVGDRLK RDEWSEGAVS TLLEAYEAKW  60
VLRNRAKLKG QDWEDVARHV STRASETKST KTQTQCKNKI ESMKKRYRSE SAAVSEASSW  120
PLFPRLDLLL RGSAPPPPHP PVNNAPLMLI EPFLPPPPPP PHLPHGIAQN SNGSNGVGRG  180
PKEDGVGMKL SDHELEKNPP MDTDSSTPAL YGDKEKMKSK SLKMRADKKK RRREEVWEKK  240
LSAKEVQELV KGERNVPLII DFYATWCGPC ILMAQELEML AVEYESSALI VKVDTDDEYE  300
FARDMQVRGL PTLYFISPDP NKDAIRTEGL IPIQMMRDII DNQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hyp_A8e-1525733053130Thioredoxin
3hyp_B8e-1525733053130Thioredoxin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126617.11e-84formin-1-like
TrEMBLA0A2R6QKJ11e-149A0A2R6QKJ1_ACTCH; Trihelix transcription factor
STRINGcassava4.1_011546m4e-81(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-56sequence-specific DNA binding transcription factors