PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn207451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WOX
Protein Properties Length: 242aa    MW: 27036.1 Da    PI: 9.2328
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn207451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-203596257
                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Achn207451 35 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 96
                58*****************8678*************************************97 PP
2Wus_type_Homeobox114.35.9e-373498265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
         Achn207451 34 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 98
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1130101IPR009057Homeodomain-like
PROSITE profilePS5007110.4633197IPR001356Homeobox domain
SMARTSM003891.1E-533101IPR001356Homeobox domain
CDDcd000861.89E-63698No hitNo description
PfamPF000461.6E-173696IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-73696IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVIPVTRHCS ADLRDKNNKK RLPEAASGTT LQQSSTRWTP TTDQIRILKD LYYNNGVRSP  60
SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF TTEIPMQRSG NTWRSSHEDP  120
IYNKYSIISP GVPSPSSSTT SSTSPAVVAV GQMGSYGYGS VTMEKSFRDC SISAGCSGGG  180
GSIAHNFWVG SDPYNYSPNY PFFDKRKSVE ETPTEEEQEQ APEIETLPLF PMHGNDISSG  240
F*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106253.11e-90protein WUSCHEL
SwissprotQ8LL112e-79WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2R6Q2561e-154A0A2R6Q256_ACTCH; Protein WUSCHEL like
STRINGEOX908652e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-39WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]