PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn201071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SRS
Protein Properties Length: 367aa    MW: 39586 Da    PI: 7.4615
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn201071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.47.7e-681452974154
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.kskkqsalsstklssaeskke 99 
                 +++sCqdCGnqakkdC+++RCRtCCksrgf+C+thvkstWvpaakrrerqqq a++++++++++  +++++kr re+    ++s+l +t+l+ + s   
  Achn201071 145 TGISCQDCGNQAKKDCTQMRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQQQIASLHQQQQQQQrvERENPKRMRESnIPIASSSLVCTRLPANAS--G 241
                 5689***************************************************99988887766777778877763566788889999988764..6 PP

      DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                 le+ ++P+ev+seavfrcvrvs +dd g++e+aYqtav+igGhvfkGiLydqG+e+
  Achn201071 242 LEVGNFPSEVNSEAVFRCVRVSVLDDgGDDECAYQTAVNIGGHVFKGILYDQGAES 297
                 89999*********************899************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.0E-64146296IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.2E-27148190IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-25247294IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAARQSSFCY GLSATIEVWD SLKGGKMAGF FSLGGGRGTN PNTNQDQQQT HNPNSNNPVA  60
EICPENWFLY RNEDIAYRGF ELWQQQQQPH QHQPPPPHVL QHRHQLQDLY SSAGGLAVGP  120
STLADEPPRS GFVMMSGGGS GSGGTGISCQ DCGNQAKKDC TQMRCRTCCK SRGFQCHTHV  180
KSTWVPAAKR RERQQQIASL HQQQQQQQRV ERENPKRMRE SNIPIASSSL VCTRLPANAS  240
GLEVGNFPSE VNSEAVFRCV RVSVLDDGGD DECAYQTAVN IGGHVFKGIL YDQGAESQYM  300
AGESSSGTAS GLNLVGADAA TASFAVTTTA ATVAVSQAAA FLDPSLFPAP LNTFMSGTQF  360
FRHPRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100954.11e-118protein SHORT INTERNODES
SwissprotK4B6C91e-92EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLA0A2R6R5V40.0A0A2R6R5V4_ACTCH; Protein SHI RELATED SEQUENCE like
STRINGEOX909421e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-71Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]