PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn200301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27328.7 Da PI: 7.4345 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.1 | 7.7e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppG+rF Pt+eelv++yL++k+++++ el++vi+ +di+++ePw+Lpk ++ ++++w+fF++r++++a+g r++r+++sgyWkatg+ v+s+ Achn200301 4 MPPGYRFYPTEEELVSFYLRNKLQRNRDELDRVIPVLDIFELEPWHLPKlsgeLCHRDTEQWFFFAPRQEREAHGGRPSRTMASGYWKATGSPSYVYSS 102 79****************************999***************656653344677*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kkt+vfy+g+a +g+kt+W m+eyr+ Achn200301 103 DNRVIGVKKTMVFYEGKAASGRKTKWKMNEYRA 135 *******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-49 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.728 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-24 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEEMPPGYRF YPTEEELVSF YLRNKLQRNR DELDRVIPVL DIFELEPWHL PKLSGELCHR 60 DTEQWFFFAP RQEREAHGGR PSRTMASGYW KATGSPSYVY SSDNRVIGVK KTMVFYEGKA 120 ASGRKTKWKM NEYRAIEQPA GCAVPKLRNE LSLCRVYVIS GSFRAFDRRP VGSETGRTVI 180 QQIRGDQSTQ NTRTVEKTSS SESSSSEVDQ FEFSQTNLGM FNGLEPLLEW DQLNWV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 4 | 157 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 4 | 157 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 4 | 157 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 4 | 157 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-34 | 4 | 157 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 4 | 157 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 4 | 157 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028083537.1 | 1e-115 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-87 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2R6P747 | 1e-175 | A0A2R6P747_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_014914m | 1e-103 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-88 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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