PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn199471

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB

Protein Properties

Length: 273aa MW: 30759.7 Da PI: 8.2706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn199471	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d++k +G g W+ +++ g++R++k+c++rw++yl Achn199471 14 RGAWTAMEDKILKDYIKVHGEGKWRDLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	47.5	4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++ +k++w++ Achn199471 67 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNTIKNYWNT 110 7899****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.328	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.01E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.12E-10	16	61	No hit	No description
PROSITE profile	PS51294	23.948	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-13	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.62E-10	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGRSPCCAKE GLNRGAWTAM EDKILKDYIK VHGEGKWRDL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TRDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNTIKNYWNT NIGKKLVQTP 120 NRKSPSQSKD NYSPATKLYL SAESRVVHTK ASRCTQVFIN TTEPQKSQQP EPNTVVGPPA 180 VNGFNRDDLV DPLDKISPLV STDCEGSDFL IDFELDDKFL SDLLNTDFPP LCDGDADTNK 240 ISSSPISSQT LSFSDEMLNN NNLQGMDWFQ DQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028089226.1	1e-105	myb-related protein 308-like
TrEMBL	A0A2R6PT25	0.0	A0A2R6PT25_ACTCH; Anthocyanin regulatory C1 protein
STRING	VIT_09s0002g01400.t01	2e-99	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-62	myb domain protein 3