PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn193711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 142aa    MW: 15944.7 Da    PI: 8.8198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn193711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-191969255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+++AeIrd       r  +r++lg+f taeeAa+ +++a+ +++g
  Achn193711 19 KYRGVRRRP-WGKFAAEIRDlT-----RqgARVWLGTFNTAEEAARTYDRAAYAMRG 69
                8********.**********55.....224*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.2751977IPR001471AP2/ERF domain
PfamPF008473.9E-141969IPR001471AP2/ERF domain
CDDcd000181.88E-281978No hitNo description
Gene3DG3DSA:3.30.730.101.5E-301979IPR001471AP2/ERF domain
SMARTSM003806.8E-341983IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-221978IPR016177DNA-binding domain
PRINTSPR003674.1E-112031IPR001471AP2/ERF domain
PRINTSPR003674.1E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEGDSKGKVK DEKGGDEVKY RGVRRRPWGK FAAEIRDLTR QGARVWLGTF NTAEEAARTY  60
DRAAYAMRGQ LAILNFPEEY NLQSSGSSGT RSSSSSSSSS IMPESIGERS EERKQVIEIE  120
YLDNKLLEEL LESEEKRSKK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-36141419129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039174.11e-48PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2R6PKN74e-73A0A2R6PKN7_ACTCH; Ethylene-responsive transcription factor
STRINGXP_010039174.14e-48(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]