PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn191201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 200aa MW: 22729.2 Da PI: 9.3451 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.7e-15 | 58 | 132 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp kf+e+h k ++++++le e+g ++e +i + + +++GW+ F+ +++L++gD vvF+l++ ++f +v v+r+ Achn191201 58 GLPTKFCEDHLPK--TTVQMVLEEENGTEYEAVYI--GERT--GISGGWRAFALDHKLDDGDAVVFELIEPTRF--KVYVVRA 132 69********533..5689***************4..4443..399**********************987777..8877775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.1E-12 | 44 | 133 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-13 | 57 | 131 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-17 | 58 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-16 | 58 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.62E-18 | 59 | 131 | No hit | No description |
PROSITE profile | PS50863 | 11.462 | 59 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAKESVNDYE EARKQRVEDN KKRFEQRLAK PKTKCVYTTE PRRSSRARNP VSSYRDDGLP 60 TKFCEDHLPK TTVQMVLEEE NGTEYEAVYI GERTGISGGW RAFALDHKLD DGDAVVFELI 120 EPTRFKVYVV RASNCSTQED DVAVGDRATC NDENTSHEAK ESNKNNSKAE PRRSTRSKKD 180 VGSKKEERSK SSGRKRKKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 197 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077403.1 | 4e-59 | putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A2R6PPL8 | 3e-91 | A0A2R6PPL8_ACTCH; B3 domain-containing protein | ||||
STRING | VIT_06s0004g08270.t01 | 9e-46 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12510 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-29 | B3 family protein |