PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn188191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 319aa    MW: 35277.4 Da    PI: 4.5936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn188191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29135193259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ve+s  dp++ ++ Y+g+H+h+
  Achn188191 135 ADSWAWRKYGQKPIKGSPHPRNYYRCSTSkGCAARKQVEKSPADPDIYIVSYTGDHTHP 193
                 79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-31121195IPR003657WRKY domain
PROSITE profilePS5081132.225129195IPR003657WRKY domain
SuperFamilySSF1182906.41E-26129195IPR003657WRKY domain
SMARTSM007743.0E-35134194IPR003657WRKY domain
PfamPF031067.2E-25136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADGWDLHAV VSGGAAPWDG GINTVEDPSP DFSSLTLNND NSPFYHQDFF DNTDFQFQGL  60
EEIYQGLNPP LPPINQQQTQ PPPPQQQIIQ TQIMNSRAGS SLSSPAFDSQ TVRPRRRKNQ  120
QTKWVKEMSH EELLADSWAW RKYGQKPIKG SPHPRNYYRC STSKGCAARK QVEKSPADPD  180
IYIVSYTGDH THPRPTHRNS LAGSTRNKSS NPAPNLTSGE SSAAQPPSTS APNQFGDSSS  240
PVSASSFSPT SMEGDSACTP RVTVEVRDDC DVEEMEEDRE DYDDEDLLIP NMVMSEDILK  300
GFEELRGRFS GSNSSDFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-161351961780Disease resistance protein RRS1
5w3x_D1e-161351961780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107295.13e-71probable WRKY transcription factor 27
TrEMBLA0A2R6RSQ10.0A0A2R6RSQ1_ACTCH; WRKY transcription factor
STRINGMigut.F00276.1.p4e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-49WRKY DNA-binding protein 27