PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn175001
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 946aa    MW: 104859 Da    PI: 7.7125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn175001genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31628685260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve++  d++++ei+Y+g+Hnh+k
  Achn175001 628 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVETTL-DGHITEIVYKGTHNHSK 685
                 7****************************************.***************85 PP
2WRKY103.41.2e-32788846159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d  +v++tYeg+Hnh+
  Achn175001 788 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCPVRKHVERASHDVGAVITTYEGKHNHD 846
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.57E-5751IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.6E-4314284IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.22E-3865314No hitNo description
SMARTSM003672.67398IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135161.27594IPR001611Leucine-rich repeat
SMARTSM0036710099123IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003674149174IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003679.6175200IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367270225250IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036718251276IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF520473.84E-24266466No hitNo description
Gene3DG3DSA:3.80.10.107.8E-27294485IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003670.029327352IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.81327349IPR001611Leucine-rich repeat
SMARTSM003671.1353378IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036729379404IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003677.8405433IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.043405421IPR001611Leucine-rich repeat
Gene3DG3DSA:2.20.25.801.3E-26620686IPR003657WRKY domain
SuperFamilySSF1182909.81E-24623686IPR003657WRKY domain
SMARTSM007749.7E-34627685IPR003657WRKY domain
PfamPF031061.1E-23628683IPR003657WRKY domain
PROSITE profilePS5081121.976628686IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-37773848IPR003657WRKY domain
SuperFamilySSF1182904.45E-29780848IPR003657WRKY domain
PROSITE profilePS5081137.608783848IPR003657WRKY domain
SMARTSM007741.0E-38788847IPR003657WRKY domain
PfamPF031062.6E-25789846IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MKKQTSGNEF GYNRFDLLSE EIILSILDCL NENPFDRKSF SLVCKSFYAI ESWHRKSLKP  60
LRSEHLTKIL SRYPNVTHLD LSLCPRITDT SLSLMSRSKM LRSIDLSRSK FFTHVGLSNL  120
VTNCSNLVDI DLSNATELRD LAAAAIAEAM NLEKLWLGRC KSITDIGIGC IAVGCRKLRL  180
ISLKWCLSVG DLGVGLLAVK CKEIRSLDLS YLPITTKCLP SILNLEHLED LVLEGCLGID  240
DDSLAVLKQG CKSLEMLDMS NCLNVSHVGL SSLTTDNGHL QQLIFAYGSP VTPAFAESLH  300
KLSTLQSIKL DGCTVTSLGL KAIGNWCASL REISLSKCLG LTDDGLSSLV TKHRDLRKLD  360
ITCCRKITHV SIAHITNSCM SLVSLRMESC SRVSKEAFVF IGQRCHFLEE LDLTDNEIDD  420
EVTDVGLLSL ASISCLQNMT ILHLKGLTPR GLVAALLACG GLTKVKLQAS FKSLLAPPLC  480
EHLEARGCAF QWREKMFQIN LPSPTTGTFG GQDLKEKRSY SDFSFQLPQT RPPPSSSSMF  540
LSSTNSFPSE ESHKRKHDGW NMNKPSEETQ FPSFNPRGKS EFAPNQSFST EISTSNQTTN  600
MQSNSAPASN HIPYVQPPQY QREQRKSEDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT  660
KKKVETTLDG HITEIVYKGT HNHSKPQSTR RSSLQSIQHS SNLGISNTIG GNSEMEFIGT  720
PENSSVSFGE EDLEQGSSMS KSDDDNENEP EAKRWRGENE NEVISANGNR TVREPRVVVQ  780
TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTYAGCP VRKHVERASH DVGAVITTYE  840
GKHNHDVPAP RGSGGYPPVN RATTDSGSGN GAPVIRPLAM TNNLNLTTNY PSFLNNIRSP  900
ETKNQVPYTL EMLQSPGSFG FSGFQNSVGA KEEPKDDSFF EQFLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35628849878Probable WRKY transcription factor 4
2lex_A3e-35628849878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482044.10.0PREDICTED: F-box/LRR-repeat protein 3-like, partial
RefseqXP_028111974.10.0F-box/LRR-repeat protein 3-like isoform X1
RefseqXP_028111981.10.0F-box/LRR-repeat protein 3-like isoform X2
SwissprotQ8RWU51e-157FBL3_ARATH; F-box/LRR-repeat protein 3
STRINGSolyc10g076290.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Callis J,Vierstra RD
    Protein degradation in signaling.
    Curr. Opin. Plant Biol., 2000. 3(5): p. 381-6
    [PMID:11019805]
  2. Xiao W,Jang J
    F-box proteins in Arabidopsis.
    Trends Plant Sci., 2000. 5(11): p. 454-7
    [PMID:11077244]