PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 576aa    MW: 63751.9 Da    PI: 8.6436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-08486535147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Achn172691 486 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 535
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.21E-8286376IPR029071Ubiquitin-related domain
PROSITE profilePS500538.894292356IPR000626Ubiquitin domain
CDDcd017690.00846295362No hitNo description
PROSITE profilePS5129414.453481540IPR017930Myb domain
SMARTSM007171.2E-7485538IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10486536IPR009057Homeodomain-like
CDDcd116603.54E-17487537No hitNo description
SuperFamilySSF466899.4E-16487568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RAARSARRRC SFRKKVDDNQ MCAFDLLAAI AGKILLEGEG  60
SPSTCDILTG NELCPTAKDS IKKEQQVEDN LLKVENCDQG SCDRSFFISE LVSQVPVLEH  120
CSKEFSHARD DGCCRLPSVI TPSDCSEKVG SAEKLVHDKC KILLGSFSSK VEVSSSGDRK  180
PTALVSVGNS MTLPLCTNHV SRGSFPASRD DVKLVIRDDD ENCSVCTQPS TTTMPFRSRP  240
CIGDRRIRKR LSSKYWKVTP KLKHDENFNA TSGTSARVAG HYTKFQSKDS HVKLRIKSFR  300
VPELFIEIPE SATVGSLKRR VMEAVTTILG GGLRVGVLLQ GKKIRDDEKT LLQTGICHDN  360
KLDALGFSLE PSPSQAPTTL CHEDCPDLLT CDTPQPLTRY PPAPVVVHNV VQQRTADPLT  420
DLPLANLGNF VESDHDSAPS PPEIPVDKSP VESRALVAVP AMNVEALAMV PLRKSKQSEA  480
VQRRIRRPFS VSEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR  540
ISPQQRRGEP VPQELLDRVL TAHAYWSQQL SKPET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-534735724103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028076.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E31e-146TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1R3HBS80.0A0A1R3HBS8_COCAP; Uncharacterized protein (Fragment)
STRINGPOPTR_0001s24840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-132TRF-like 2