PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 292aa    MW: 32935.4 Da    PI: 9.9902
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.91.8e-10144165123
        GATA   1 CsnCgttkTplWRrgpdgnktLC 23 
                 Cs C+ttkTplWR+gp+g+k  C
  Achn168361 144 CSDCNTTKTPLWRSGPRGPK-FC 165
                 *******************9.77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.7E-11138204IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-6138165No hitNo description
PROSITE profilePS5011410.884138165IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-9141193IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.18E-8143186No hitNo description
PfamPF003206.2E-8144165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MIPTYHFRED KQLQLFNKNP QSSSSSPPSL SSHPFTYSIP DQEGCDNHSE LHHIEYQQEA  60
SNFAMNGGSH DHHHSDRGLK LSLWKTEEGN ENERDRYGSA KVLPFKLRLM RKMSTDQMKF  120
GDQKQQSSPT KTENSSNNNP IRVCSDCNTT KTPLWRSGPR GPKFCIEVLK EIHYLVVQSL  180
CNACGIRQRK ARRAMAAAAN GTIFEKETMQ VKAKVQHVKA KRSKYGHVAQ FKKRSKLAAN  240
STPSHGLTKK LCFEDFLISL SKNSAFHRVF PQDEKDAAIL LMALSCGFVH G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090203.12e-73GATA transcription factor 21-like
TrEMBLA0A2R6QUT11e-180A0A2R6QUT1_ACTCH; GATA transcription factor
STRINGVIT_11s0016g02210.t015e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-16cytokinin-responsive gata factor 1