PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn167501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 264aa    MW: 29835.7 Da    PI: 9.4347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn167501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-071855136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRt 36
                     rg+WT+ Ed+ l +++k +G g W+  ++  g  ++ t
       Achn167501 18 RGAWTAVEDKVLREYIKVHGEGKWRNLPKLAGqsLNHT 55
                     89****************************99555444 PP
2Myb_DNA-binding285.1e-09761102047
                      TTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  20 Ggg........tWktIartmgkgRtlkqcksrwqky 47 
                      Gg+         W++Ia +++ gRt++++k++w++ 
       Achn167501  76 GGHiqyatepyKWSLIAGRLP-GRTDNEIKNYWNTN 110
                      555666666788*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.4221371IPR017930Myb domain
SuperFamilySSF466896.39E-1316107IPR009057Homeodomain-like
SMARTSM007175.4E-1317113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-171939IPR009057Homeodomain-like
CDDcd001675.16E-720111No hitNo description
PfamPF002491.2E-684111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-1787111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVKEDGETFR NLQEGLNRGA WTAVEDKVLR EYIKVHGEGK WRNLPKLAGQ SLNHTHTHTH  60
THTHTHTHTR IRYMYGGHIQ YATEPYKWSL IAGRLPGRTD NEIKNYWNTN LSKRIHAHHH  120
SSPNKVVEKK KKKKNSNMGP PLTSQSRNIE SSAVRTKAMR CSKVFIPGPL KIAPIDTNIV  180
EASPETTNTS LVAPLMDTIL TPVDYNPMDF ISGLLNSDFQ GMCDLHYMNG NSNGNNILTS  240
SDVTLLFSMD MLEDWTYNHQ GFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-11181382126MYB3
3zqc_D2e-11181382126MYB3
3zqc_G2e-11181382126MYB3
3zqc_J2e-11181382126MYB3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-27MYB family protein