PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn166151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 389aa    MW: 42388.6 Da    PI: 7.9638
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn166151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17310343134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Achn166151 310 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 343
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16304354IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596304340IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15308367No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14308341IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-13309356No hitNo description
PROSITE patternPS003440310335IPR000679Zinc finger, GATA-type
PfamPF003202.8E-15310343IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MWSPQDVGSS LHVLTPPPPL PLPLIALLPA TGLSEKKMIP DEKIIVNPMP EPEKGLPIRL  60
FPHKVLRDRW INLGSETGFK FTTIQKMVGA DFMDEVECAS FFDQFEDFID FPADNEWGLS  120
SGGCNDLSSI WPKTSDSLPC SGLSAELSVP CEDIIPLEWL SNFVEDSFSG GGMTLNKENL  180
TVNKESSHNQ FKPSSPISVL ENSTSSSSSS SNGSCSGGMI LPISPTLHGP QRARSKRPRP  240
ATFNPHPAIN LLSPTSVIEN QQSVPVPISS SESENFVESP IKKKKKKVKL SIPLGPVEMN  300
QNPPSAVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPLL  360
HSNSHKKVVE MRNKGGEKIF TSINPSMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.11e-135GATA transcription factor 8-like
RefseqXP_028109480.11e-135GATA transcription factor 8-like
TrEMBLA0A2R6QB150.0A0A2R6QB15_ACTCH; GATA transcription factor
STRINGXP_009760862.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein