PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn157701

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 406aa MW: 41615.3 Da PI: 6.6727

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn157701	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	224	250	5	30
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 h+++Er RR+ri +++ L+el+P+ + Achn157701 224 HSIAERLRRERIAERMKALQELVPNgN 250 99**********************944 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-7	217	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-4	217	258	No hit	No description
PROSITE profile	PS50888	10.379	219	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-6	221	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MQPCSREMQG MNSILGQAQL SLQDLQNSQI PNPNSQMQHF EAAAAHDDFL DQMLSTLPSC 60 SWPDLAGSTP KSLWDISSNT LSIGSNKSPD MDDLPPPFHF DDDQSAELAS KLRQQQIGGG 120 GAGLAAAKSL LLQQQLLLQS RGGGLRSPSG GSGAGDSGLL PLPLRLGGGG DGGDISSFKS 180 TSINYGGPTA VLNQAPAASG SGGGGPSQPR QRVRARRGQA TDPHSIAERL RRERIAERMK 240 ALQELVPNGN KVLSMSRLGA AAAVAPLVAD MSSEGGGDCI QDNGGFRGGN GTQTASTSNA 300 SNDGMTVTEH QVAKLMEKDM GSAMQYLQGK GLCLMPISLA NAISNATCHS RNPLASAAHH 360 HLLADGGGVP SSPNMSVLTV QSATAGNGGA DSSSPRPSPS RDHGV*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MQPCSREMQG MNSILGQAQL SLQDLQNSQI PNPNSQMQHF EAAAAHDDFL DQMLSTLPSC  60
SWPDLAGSTP KSLWDISSNT LSIGSNKSPD MDDLPPPFHF DDDQSAELAS KLRQQQIGGG  120
GAGLAAAKSL LLQQQLLLQS RGGGLRSPSG GSGAGDSGLL PLPLRLGGGG DGGDISSFKS  180
TSINYGGPTA VLNQAPAASG SGGGGPSQPR QRVRARRGQA TDPHSIAERL RRERIAERMK  240
ALQELVPNGN KVLSMSRLGA AAAVAPLVAD MSSEGGGDCI QDNGGFRGGN GTQTASTSNA  300
SNDGMTVTEH QVAKLMEKDM GSAMQYLQGK GLCLMPISLA NAISNATCHS RNPLASAAHH  360
HLLADGGGVP SSPNMSVLTV QSATAGNGGA DSSSPRPSPS RDHGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	233	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010656597.1	1e-137	PREDICTED: transcription factor UNE12 isoform X2
TrEMBL	A0A2R6QHL4	0.0	A0A2R6QHL4_ACTCH; Transcription factor bHLH66 like
STRING	VIT_11s0037g00040.t01	1e-129	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-44	LJRHL1-like 1