PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn155261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 444aa    MW: 49119.2 Da    PI: 6.6776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn155261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-3093150260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Achn155261  93 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKIFERSH-DGHITEIVYKGTHDHPK 150
                 8****************************************.***************85 PP
2WRKY106.71.1e-33260318159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Achn155261 260 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 318
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-2686151IPR003657WRKY domain
PROSITE profilePS5081122.82587151IPR003657WRKY domain
SuperFamilySSF1182902.48E-2490151IPR003657WRKY domain
SMARTSM007741.0E-3292150IPR003657WRKY domain
PfamPF031062.1E-2393149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37245320IPR003657WRKY domain
SuperFamilySSF1182901.57E-29252320IPR003657WRKY domain
PROSITE profilePS5081138.825255320IPR003657WRKY domain
SMARTSM007743.1E-39260319IPR003657WRKY domain
PfamPF031062.4E-26261318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNYQRSEPFE QVQAQYQSQS FSSLPSVKSE MTPSSKELNL HAPVHMFASR AIVSSRVDSD  60
ESNQVMSLST GVQTSQADHN DAGASVTAER SSDDGYNWRK YGQKLVKGCE FPRSYYKCTH  120
PNCEVKKIFE RSHDGHITEI VYKGTHDHPK PQPSRRFTAG AILSIQERSD KVSSLIAQED  180
KYTTNGQLSL NIEPNGTSEL SPCGANDDAV EGADHDDGDE DDPFKKRRKV DGVSIDLTQV  240
VKPIREARVV VQTVSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNAG CPVRKHVERA  300
SHDPKAVITT YEGKHNHDVP TAKASAHDMA GPATVNGTVR VRSEDSDSIS LDLGVGISSV  360
AENQSNERQP MLDAEPMQIQ VNGVSSNFKV VQSNSVSTYY NVVNGVAYGS RENRVENRNF  420
QVQPLNHSAN LYTQNLERVL LGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-3893320877Probable WRKY transcription factor 4
2lex_A9e-3893320877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7826029e-69JQ782602.1 Vitis vinifera cultivar Thompson WRKY20 transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127034.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_028127035.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-138WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2R6QD320.0A0A2R6QD32_ACTCH; WRKY transcription factor
STRINGVIT_19s0090g01720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-133WRKY family protein