PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn150051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 24445.2 Da PI: 8.7012 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6.2e-12 | 98 | 185 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvfr 98 +s+ + +lv+pkk + ++s+ ++ + g++We+ + + s+ + ++Wk+F+ +n+Lk gD +vF+ + ++s+ +++v+++r Achn150051 98 KSHLKPLYQLVFPKKMYSLL----PCSRVPVILTYCGKKWEMVY--YGDSNPKRFDRNWKNFAIDNDLKLGDACVFEIVeiSSSNLKFRVQILR 185 56666666777777766222....245555667778********..555555559**********************66323367777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-14 | 88 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-17 | 88 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.67E-16 | 90 | 185 | No hit | No description |
SMART | SM01019 | 0.0026 | 92 | 187 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 92 | 187 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 94 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRCLVVERER KRWKENPRLD NCRDTHKMEP LSPNNEVEHP QMDKPPARTV ENLSTKAVEA 60 IQRDPKTKKL LDPKTTEFED DEFWPLSGKP YFHVFVVKSH LKPLYQLVFP KKMYSLLPCS 120 RVPVILTYCG KKWEMVYYGD SNPKRFDRNW KNFAIDNDLK LGDACVFEIV EISSSNLKFR 180 VQILRGEFPS QLMERVKGEA SDNPIIVD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028100303.1 | 5e-76 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A2R6RD19 | 1e-130 | A0A2R6RD19_ACTCH; B3 domain-containing protein | ||||
STRING | EMJ22139 | 2e-48 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-09 | B3 family protein |