PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 298aa    MW: 34063.7 Da    PI: 7.2223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.5e-11118209182
                 EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                 f+k+lt  dv+k  rl +p + ++++           ++k+  ++++ ++ ++g   s+++k+  ++++ +yv+t+GW+eF ++n+ k   D v++
  Achn146221 118 FEKQLTDTDVNKG-RLLIPQELFKKFvkplmndeerrSLKHSHETQVDVYGSKGirHSMKFKI--WGSK-MYVITSGWNEFRNDNEFKaLHDWVTL 209
                 89***99888876.6********999****999998866666888999999999666666666..9996.9***************9944566554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-12118216IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0052118224IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-12118216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-10118210No hitNo description
PfamPF023629.7E-8118210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEDSEANNN NNNNNGVGNN HPEETQEELR EKNSAALLLV TMKYLVVDEQ TSITLEALKT  60
ETLCQHWMKG CESFKTAIKN GLDPALPELG NPIDGLTPPK LPPIKVLEGI IGECGVPFEK  120
QLTDTDVNKG RLLIPQELFK KFVKPLMNDE ERRSLKHSHE TQVDVYGSKG IRHSMKFKIW  180
GSKMYVITSG WNEFRNDNEF KALHDWVTLW VFRHQETEKL CSVMIARTFP TDKLVTKRSQ  240
KKMKVEELNW QQVQGAAQGH RVEYSPQRNR CDDSENVSDQ PIGKASQKKR KAEEMNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242TKRSQKKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QUZ63e-98A0A2R6QUZ6_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-16B3 family protein