PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn146211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28462.5 Da PI: 6.6819 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.5e-10 | 116 | 220 | 1 | 92 |
EEEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldg 86 f+k+lt dv+k grl++ k+ +e++ ++++ +++++ ++ ++g ++ +k++++ ++ + vlt+GW+eF +n+ k +D v++ + + Achn146211 116 FEKQLTDTDVNKGqGRLSIAKELVEKFvkplmgeeerrSLEHSQETQVDVYGSKGIRYPMKFKIWSSK-TNVLTSGWNEFRGDNEFKaLNDWVTLWVFR 213 99********99889****************9888888666668999**********99999889887.569**************9558888766444 PP S.SEE.. CS B3 87 r.sefel 92 + ++++l Achn146211 214 HkETEKL 220 4344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-11 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 116 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.4E-8 | 116 | 224 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.15E-9 | 116 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEEDSEANNN NNNGVGNNHP EETQEELREK NFAALLLVTM KYLIVDEQTS ISLEALKTEA 60 HCQHWMKGCE SFKTAIKNGL DPALPELGNP IDGLTPPKLP PIKVLEGLIG ECGVPFEKQL 120 TDTDVNKGQG RLSIAKELVE KFVKPLMGEE ERRSLEHSQE TQVDVYGSKG IRYPMKFKIW 180 SSKTNVLTSG WNEFRGDNEF KALNDWVTLW VFRHKETEKL CFVMIARTFP TGKLVTKRSQ 240 KKRKAEELNK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6QUZ6 | 1e-107 | A0A2R6QUZ6_ACTCH; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6430 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 4e-19 | B3 family protein |