PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 456aa    MW: 52117.2 Da    PI: 9.7169
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-10321415182
                 EEEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                 f+k+lt  d++++ grl++  + +e++           ++k  +++++t + ++g ++ +k+++r +s+++v+ +GW+eF+  n+ k   D v+ 
  Achn146201 321 FEKQLTDTDMSTHqGRLSIAQELVEKFvnplmseeerrSIKRGKKIQVTAYGLKGIEYPMKFKFRASSKTHVMISGWNEFCVGNKFKaRHDWVTM 415
                 89***9999999889****************988888755556888999999**********************************944455554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.079114226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-10114220IPR015300DNA-binding pseudobarrel domain
PfamPF037542.0E-5114191IPR005508B3 domain-containing protein
SuperFamilySSF1019367.46E-10114221IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-7114223No hitNo description
SuperFamilySSF1019361.96E-13321428IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-8321431No hitNo description
SMARTSM010197.3E-4321430IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-13321429IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-7321416IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEEDSEASNN NDVGNNQPEE TQEELREKNL AALLLVTMKY LIVDEQTSIS LEALKTEAHC  60
QHWMKGCESF KTAIKNGLDP TLPELGNPID GLTPPKLPPI KVLEGLIGEC GVPFEKQLTD  120
TDVNKGQGRL SISKELFKKF VKPLMSDEER RRLKHGQETQ VDVYGSKEIR YSMKFKIWSS  180
KMHVLTCGWN EFRGDNEFKA LYDWVTLWVF RHKETEKLCF VMIARTFPTG KLVAKRSVKI  240
LKKLTMEDNS EANNKNNNGA LTSQFLGQQW VNGSESFKTA IKKGLVPKIS ELGKPIDGFI  300
PPKLPPVDAL EGLIGECGVP FEKQLTDTDM STHQGRLSIA QELVEKFVNP LMSEEERRSI  360
KRGKKIQVTA YGLKGIEYPM KFKFRASSKT HVMISGWNEF CVGNKFKARH DWVTMWAFRH  420
KETQKLCFVM IARRFRTNRL VRPPQTKRRA DEMNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QUZ63e-99A0A2R6QUZ6_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-16B3 family protein