PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn146171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25470 Da PI: 5.1246 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 49 | 96 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Achn146171 49 IYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDAAALTV 96 69****998.**********854...6*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.76E-22 | 48 | 108 | No hit | No description |
Pfam | PF00847 | 3.2E-12 | 48 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 49 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 49 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.748 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSRETESSS IHSDSSPSSS SGIQPKSPVP VQNRPKRSRQ ESNNTKHPIY RGVRMRAWGK 60 WVSEIREPKK KSRIWLGTFS TPEMAARAHD AAALTVKGGS AVLNFPHLAD LLPRPATCSA 120 SDVQAAAAKA ASMDHLSPSA AATSSSSFSS SETAEDELST AETAELGEIV ELPSLGESYD 180 SAESRSDFVF VDSVGVDVDG AGWVCYPHQW LHEDFVFFAS DRLTESVVSG DFGTSSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 47 | 111 | 12 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075151.1 | 1e-76 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 1e-56 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2R6Q4Y7 | 1e-170 | A0A2R6Q4Y7_ACTCH; Dehydration-responsive element-binding protein (Fragment) | ||||
STRING | XP_004291182.1 | 9e-63 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-45 | ERF family protein |
Publications ? help Back to Top | |||
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