PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn141501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20911.8 Da PI: 11.4201 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.6 | 2e-15 | 61 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ r +++AeIrdp + +r++lg+f tae+Aa a+++a+ +++g Achn141501 61 HYRGVRPRP-REKFAAEIRDPAR---SgARVWLGTFHTAEDAAGAYDRAAYRMRG 111 8*****999.8*********843...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 60 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-22 | 60 | 120 | No hit | No description |
SMART | SM00380 | 7.6E-31 | 61 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-20 | 61 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.417 | 61 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 61 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-7 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-7 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MCTEIDFESE MALMDSVRRH LLDDNWGQLP PKAKRLRGHD SLRSPHRGGR GAAVVLPKWK 60 HYRGVRPRPR EKFAAEIRDP ARSGARVWLG TFHTAEDAAG AYDRAAYRMR GSRALFNFPH 120 RVNSGKPDQV RVASKRSSPE RLRSSESELP KRRRKVVAAA EAVVVQVNKV EEGSTGLEAL 180 LIPRGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-32 | 58 | 126 | 2 | 70 | ATERF1 |
3gcc_A | 1e-32 | 58 | 126 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 155 | PKRRRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028112381.1 | 1e-47 | ethylene-responsive transcription factor 1A-like | ||||
Refseq | XP_028113988.1 | 1e-47 | ethylene-responsive transcription factor 1A-like | ||||
Swissprot | Q9LW50 | 2e-41 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2R6PI93 | 1e-118 | A0A2R6PI93_ACTCH; Ethylene-responsive transcription factor 1A like | ||||
STRING | POPTR_0003s07910.1 | 1e-44 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 8e-28 | ethylene responsive element binding factor 1 |