PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn137321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 196aa    MW: 22056.8 Da    PI: 4.9092
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn137321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.51.3e-197692471
     E2F_TDP 24 ivtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                +++ +eva+eLv+e                ++kn+rRR+YD+lNVL+a+++++k +k+ei+wkg
  Achn137321  7 HLKAREVADELVAEfadssnnltsldqpqyEEKNIRRRVYDALNVLMAMDIVSK-DKKEIQWKG 69
                56789*************************9***********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013724.3E-12169IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.9E-16869IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-14971IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-271074IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.5E-3776187IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-2980159IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.41E-3180167No hitNo description
CDDcd144586.41E-2880154IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MIAILRHLKA REVADELVAE FADSSNNLTS LDQPQYEEKN IRRRVYDALN VLMAMDIVSK  60
DKKEIQWKGL HQTSLDDIAE LKFIGLQNLI QHNQQLYSSG NSTSGGVALP FILVQTRPHA  120
TVEVEISEDM QLVHFDFNST PFEIHDDNYV LKAMRFCERP QGDEVVPNFP ADGGEGSGMF  180
QPQFTTHPAL SNRAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2012703389PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072876.11e-101transcription factor-like protein DPB isoform X1
SwissprotQ9FNY24e-81DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2R6PGD71e-130A0A2R6PGD7_ACTCH; Transcription factor-like protein
STRINGPOPTR_0006s12620.19e-99(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-83Transcription factor DP