PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn136951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 28129.7 Da PI: 7.8643 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.1 | 1.5e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kf nvhk+FGasnv k+l++l++ +reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++++l +k+ Achn136951 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFSNVHKVFGASNVAKILNELNTAQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLKQVQVDLYNAKK 105 7********************************************************************************************999887 PP DUF260 100 e 100 e Achn136951 106 E 106 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.785 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFSNVH KVFGASNVAK ILNELNTAQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ HRLKQVQVDL YNAKKELATY IGPSATLPIL 120 QNPSFMGNNP SSSSVIPYNM SPMLGLPSVT PHTTQLQVQQ QQQQQELVRF NSGFDQGGPV 180 GPSGFNQMSS AAAMSPSLAL GSFDGSYQIQ QQPQEHSHHH ELQLPLQLLL QQQQIQQPHQ 240 QQKSGREDGR GVGPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028055532.1 | 1e-116 | LOB domain-containing protein 36-like | ||||
Refseq | XP_028055533.1 | 1e-116 | LOB domain-containing protein 36-like | ||||
Refseq | XP_028055535.1 | 1e-116 | LOB domain-containing protein 36-like | ||||
Refseq | XP_028055536.1 | 1e-116 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 5e-80 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2R6R6B4 | 1e-157 | A0A2R6R6B4_ACTCH; LOB domain-containing protein | ||||
STRING | cassava4.1_027088m | 1e-108 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 6e-77 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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