PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn132821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 278aa    MW: 30993.6 Da    PI: 5.4131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn132821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30133191259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++itY+ +H h+
  Achn132821 133 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSQTDPEMFVITYTADHCHS 191
                 79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-31118193IPR003657WRKY domain
PROSITE profilePS5081131.594127193IPR003657WRKY domain
SuperFamilySSF1182908.63E-26130193IPR003657WRKY domain
SMARTSM007745.8E-36132192IPR003657WRKY domain
PfamPF031061.3E-24134190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTTDHYFTGG TGDADLEAVV RGYNHPQTCF SPLIFEQEDH DIVLSTFPDL FETSSTFFNE  60
LEELYKPFYP QSLISSSDSG TGGETEPEKV QDKESFCGLT TPVVAGALGV KQKRRKTQHK  120
RVVKEVRAEG LSSDMWAWRK YGQKPIKGSP YPRSYYRCSS LKGCLARKQV ERSQTDPEMF  180
VITYTADHCH SQPTRRSSLA GTTRQKFSLS KTTAANSLCS PISSSSSLSP PPKDEEQQMD  240
QRSELVLSDM VLGDDFFVGF DELDRLTSDL CYSGFSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-181341941880Disease resistance protein RRS1
5w3x_D2e-181341941880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115579.19e-90probable WRKY transcription factor 29
TrEMBLA0A2R6PHX20.0A0A2R6PHX2_ACTCH; WRKY transcription factor
STRINGVIT_02s0025g00420.t013e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-46WRKY family protein