PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn131801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 630aa    MW: 69308 Da    PI: 7.7876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn131801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-17491261699
                 EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p kf+ ++ +gk   s t++l  +sg++W v+l   ++ g  ++ +GW  Fv+++ ++ gD +vF++dg+  f  +v+vf++
  Achn131801  49 EIIPSKFM-KYlEGKA--SGTVSLVGPSGNTWHVEL--IQHNGNLFFHDGWPAFVQDHTIERGDALVFRYDGDLHF--TVQVFDQ 126
                 489*****.5547773..449***************..888889**************************997777..9999997 PP
2B352.87.1e-17283377198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k++++ +v+ s  l +p +f  +h   +++++ ++l++++g sW+v+ i   k   +++l +GW  Fv++n+++ gD+++F+l+g+ e  l+v ++r
  Achn131801 283 FIKTMKRFNVSGSYTLNIPYQFSMAHL--PKCKVRIVLRNLKGGSWTVNSIPtMKVNISHTLCGGWMAFVRDNNINMGDVCIFELVGKCE--LRVYILR 377
                 89999999**************98995..45999****************7644444559*************************99544..4888776 PP
3B3451.9e-14509597596
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 +++ + + s  l +p +f  +h      +++++l +++g+ W+v+   + + ++ +++ +GW  Fv++n+++ gD+++F+l+g+ e   +v++
  Achn131801 509 MKKFNISGSFTLKIPYQFSMAHLP--DFKTEIILHNLRGQCWTVNSVPSTRVQTlHTFCGGWMAFVRDNDIQMGDICIFELIGQCEM--RVHI 597
                 5555666678899*****999942..35679***************5544444479999***********************97665..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.08534127IPR003340B3 DNA binding domain
SMARTSM010191.9E-937127IPR003340B3 DNA binding domain
PfamPF023625.0E-1550126IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-2050132IPR015300DNA-binding pseudobarrel domain
CDDcd100173.33E-1850125No hitNo description
Gene3DG3DSA:2.40.330.103.6E-2050128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-23276378IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-22276377IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-21281377No hitNo description
SMARTSM010191.2E-15283379IPR003340B3 DNA binding domain
PfamPF023621.3E-13283377IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281283379IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-22498598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-24500599IPR015300DNA-binding pseudobarrel domain
CDDcd100178.48E-20503597No hitNo description
SMARTSM010192.7E-13505601IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548505601IPR003340B3 DNA binding domain
PfamPF023621.4E-11505597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MESSRETVSM TVLVEVENEL VVERTMVAPV IGLVVVEERE LPEEERRHEI IPSKFMKYLE  60
GKASGTVSLV GPSGNTWHVE LIQHNGNLFF HDGWPAFVQD HTIERGDALV FRYDGDLHFT  120
VQVFDQSLCE KEAAFSAACT QDHGNSGKLL GWKRERVYGA SSLDDIVQGV PKKARGSHAY  180
SGCMINHQEE GWQPDEVVSV SETCQTAIYA HETRNCCSPS MDAFSFALPL QLKVPDDNSG  240
AIIENRNGKE SELGSSAGDG RLMLSASEAE GLARTFTSSY PNFIKTMKRF NVSGSYTLNI  300
PYQFSMAHLP KCKVRIVLRN LKGGSWTVNS IPTMKVNISH TLCGGWMAFV RDNNINMGDV  360
CIFELVGKCE LRVYILRVGK EGLECQNGEA AVNGIGNGLG AASHKNSERL PKKKRSNARN  420
VHLQLITKGG KNKEAGGNRD KANGGPSKNS AFSSLVKACD GKLGISNKII LEEKSDSYTK  480
ICMSMKSAPE EKMVAQSFVS SFPHFVRVMK KFNISGSFTL KIPYQFSMAH LPDFKTEIIL  540
HNLRGQCWTV NSVPSTRVQT LHTFCGGWMA FVRDNDIQMG DICIFELIGQ CEMRVHISGV  600
GKNGLDYHSG KVASNELTLA TSGGNRPLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061120.10.0B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_028061129.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2R6R3E00.0A0A2R6R3E0_ACTCH; B3 domain-containing protein
STRINGVIT_18s0001g11360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-20B3 family protein