PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn131151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | SRS | ||||||||
Protein Properties | Length: 210aa MW: 22517.5 Da PI: 8.6569 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 194.6 | 3.4e-60 | 4 | 149 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakkdC+h RCRtCCks g+ C+thvkstWvpaa+rre+qq+++ + +++a + ++kr+r ++ sa + + Achn131151 4 GMNCQDCGNQAKKDCVHLRCRTCCKSWGLPCQTHVKSTWVPAARRREKQQREEVSRAQQALLGlvggEMINPKRQR-------ESPGGRGGGSAPPVTG 95 589*********************************************9999998777665444432333333333.......3344444455666778 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+ev+++avfrcvr+s++dd++e++aYqtav+igGhvfkGi+ydqG+ Achn131151 96 LEVGHFPPEVNTAAVFRCVRLSAMDDADEQFAYQTAVNIGGHVFKGIIYDQGPV 149 9999************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.6E-61 | 4 | 148 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.8E-26 | 6 | 48 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.0E-25 | 100 | 148 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MRPGMNCQDC GNQAKKDCVH LRCRTCCKSW GLPCQTHVKS TWVPAARRRE KQQREEVSRA 60 QQALLGLVGG EMINPKRQRE SPGGRGGGSA PPVTGLEVGH FPPEVNTAAV FRCVRLSAMD 120 DADEQFAYQT AVNIGGHVFK GIIYDQGPVS RQAGGGESSS GGGQQPLNLI NATTTNVNIP 180 AATMPYSSMY PTPLCDFLAG TQFFQPPRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856966.1 | 1e-79 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9XGX0 | 6e-69 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2R6R3J1 | 1e-154 | A0A2R6R3J1_ACTCH; Protein SHORT INTERNODES like | ||||
STRING | Gorai.002G125600.1 | 2e-76 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-61 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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